Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   FY406_RS05175 Genome accession   NZ_CP043405
Coordinates   1049299..1050342 (+) Length   347 a.a.
NCBI ID   WP_003086253.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044299..1055342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS05155 (FY406_05155) - 1044653..1045471 (+) 819 WP_003086244.1 pyruvate, water dikinase regulatory protein -
  FY406_RS05160 (FY406_05160) ppdK 1045547..1048192 (+) 2646 WP_003086246.1 pyruvate, phosphate dikinase -
  FY406_RS05165 (FY406_05165) rsmD 1048292..1048831 (+) 540 WP_003086248.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FY406_RS05170 (FY406_05170) coaD 1048821..1049321 (+) 501 WP_003086251.1 pantetheine-phosphate adenylyltransferase -
  FY406_RS05175 (FY406_05175) sepM 1049299..1050342 (+) 1044 WP_003086253.1 SepM family pheromone-processing serine protease Regulator
  FY406_RS05180 (FY406_05180) - 1050477..1051808 (+) 1332 WP_003086255.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  FY406_RS05185 (FY406_05185) - 1051805..1052347 (+) 543 WP_003086257.1 YutD-like domain-containing protein -
  FY406_RS05190 (FY406_05190) rlmN 1052348..1053433 (+) 1086 WP_003086259.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  FY406_RS05195 (FY406_05195) - 1053433..1053954 (+) 522 WP_003086261.1 VanZ family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37975.79 Da        Isoelectric Point: 10.0438

>NTDB_id=383582 FY406_RS05175 WP_003086253.1 1049299..1050342(+) (sepM) [Streptococcus ratti strain ATCC 31377]
MKTIKKFKWWLISSLSIILLLVVFFFPLPYYMERPGGAYDIRTVLTVNHKEDKEKGSYNFVAVSLSKATPIQVLYAWLTP
FTEITSAKETTGGVSDADYMRINQFYMETSQNGAIYEALTLANKKASLNYMGVYVLQVSKNSTFKGVLNIADTVTGVNGK
TFHSSKELIKYVSGLKLGSKVSVQYTSENKKKTAKGKVIKLSNGKNGIGIGLVDHTKVVSDDTVEFSTNGIGGPSAGLMF
TLDIYDQLNKEDLRKGRVIAGTGTIGENGEVGDIGGAGMKVASADKIDADIFFVPNNPVDKAVLKNNPKAVNNYQEAKQA
AKKLGTKMKIVPVKNVQDAIDYLRKHQ

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=383582 FY406_RS05175 WP_003086253.1 1049299..1050342(+) (sepM) [Streptococcus ratti strain ATCC 31377]
GTGAAAACAATCAAAAAATTTAAATGGTGGCTGATTAGCAGTCTGAGTATTATTTTGCTTTTGGTAGTCTTCTTTTTTCC
TCTCCCTTACTATATGGAAAGGCCGGGCGGAGCTTATGACATTAGAACAGTCTTGACAGTCAATCATAAAGAAGATAAGG
AAAAAGGCTCTTACAATTTTGTAGCTGTGTCTTTAAGCAAGGCAACACCGATACAAGTCCTCTATGCTTGGCTGACTCCT
TTTACAGAGATTACCAGTGCCAAGGAAACAACAGGCGGAGTCAGCGATGCTGATTACATGCGTATTAACCAGTTCTATAT
GGAGACATCGCAAAACGGAGCTATTTATGAGGCGCTTACTCTAGCCAATAAAAAGGCCAGTTTGAATTATATGGGAGTCT
ATGTTCTGCAGGTCAGCAAAAATTCAACCTTCAAAGGCGTTTTAAATATTGCTGATACTGTAACTGGCGTCAACGGCAAA
ACCTTTCATAGTTCAAAAGAGTTGATTAAATATGTGTCTGGCTTAAAATTAGGCAGCAAGGTCAGTGTTCAATATACTTC
TGAAAATAAGAAGAAAACAGCTAAGGGTAAAGTTATCAAGCTGTCAAATGGTAAAAATGGCATTGGAATTGGATTGGTGG
ATCATACCAAAGTCGTTTCTGATGACACTGTTGAATTTAGTACAAATGGTATTGGCGGTCCGAGCGCCGGTCTTATGTTT
ACCCTTGATATCTATGACCAATTAAACAAAGAGGATTTGCGTAAGGGGCGTGTTATTGCAGGAACGGGTACTATTGGAGA
AAATGGAGAGGTTGGAGATATTGGCGGTGCTGGCATGAAGGTGGCATCAGCAGATAAAATTGATGCAGATATCTTTTTTG
TCCCCAATAATCCTGTAGATAAGGCTGTTTTGAAAAATAATCCTAAGGCTGTCAACAATTATCAAGAAGCCAAGCAGGCT
GCTAAAAAATTAGGAACTAAAATGAAAATTGTCCCTGTTAAAAATGTGCAGGATGCTATTGATTATTTAAGAAAACATCA
GTAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(131-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

90.751

99.712

0.905

Multiple sequence alignment