Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   FY406_RS04035 Genome accession   NZ_CP043405
Coordinates   822604..823656 (+) Length   350 a.a.
NCBI ID   WP_003090176.1    Uniprot ID   A0A7X9LCN4
Organism   Streptococcus ratti strain ATCC 31377     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 817604..828656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS04020 (FY406_04020) - 818886..820535 (+) 1650 WP_003090179.1 peptide ABC transporter substrate-binding protein -
  FY406_RS04025 (FY406_04025) - 820637..821551 (+) 915 WP_150880994.1 ABC transporter permease -
  FY406_RS04030 (FY406_04030) - 821562..822593 (+) 1032 WP_003090177.1 ABC transporter permease -
  FY406_RS04035 (FY406_04035) oppD 822604..823656 (+) 1053 WP_003090176.1 ABC transporter ATP-binding protein Regulator
  FY406_RS04040 (FY406_04040) amiF 823649..824584 (+) 936 WP_003090175.1 ABC transporter ATP-binding protein Regulator
  FY406_RS04045 (FY406_04045) - 824587..824988 (+) 402 WP_003090174.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38973.52 Da        Isoelectric Point: 4.9658

>NTDB_id=383561 FY406_RS04035 WP_003090176.1 822604..823656(+) (oppD) [Streptococcus ratti strain ATCC 31377]
MSKEKILQVNNLRVNFHTYAGEVKAIRDVSFDLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEISGDIEFKGRNLIDL
KEEDWVNIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKLAKKEALARALDIMKKVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTSTAAGSLQSIPGTPPDLLHPPKGDAFAPRNEFALDIDLEEEPPFFKVSDSHYAATWLL
DERAPQIVPPERILKRWEKWRSLKGEEPND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=383561 FY406_RS04035 WP_003090176.1 822604..823656(+) (oppD) [Streptococcus ratti strain ATCC 31377]
ATGAGTAAAGAAAAAATTTTACAGGTCAATAACCTCCGTGTCAATTTCCATACTTATGCTGGTGAGGTTAAAGCGATCCG
CGACGTCAGTTTTGATCTGGAAAAGGGTGAAACCCTTGCTATTGTAGGTGAATCTGGCTCTGGGAAATCTGTAACAACCC
GCACTTTGATGGGGCTGTCTGCTAAAAACGCTGAGATTTCAGGAGACATTGAATTTAAAGGCCGCAATCTCATTGATTTA
AAAGAAGAAGACTGGGTCAATATCCGCGGCAACGATATTTCCATGATTTTCCAGGATCCGATGACCAGCTTGGATCCGAC
AATGAGAATCGGTCTGCAAATTGCTGAGCCTATCATCAAGCATGAAAAGCTTGCTAAAAAAGAAGCTTTAGCGCGTGCTT
TAGATATCATGAAAAAGGTCGGTATTCCTAATGCTGAAGAACACATCAATGATTACCCTCATCAATGGTCAGGCGGTATG
CGCCAGCGGGCTGTTATTGCCATTGCTCTTGCAACTAATCCGGAAATTCTGATTGCTGATGAACCGACAACAGCTCTTGA
TGTGACGATTCAGGCACAGATTCTTCATTTGATGAAGGAAATCCAAAAGAATACAGAGTCTTCTATTATTTTCATTACGC
ATGATTTAGGCGTTGTAGCCGGGATGGCTGATCGGGTTGCTGTCATGTATGCCGGTAAAATTGTTGAGTACGGAACAGTA
GATGAGGTTTTCTACAATCCACAGCATCCCTATACTTGGGGACTTTTGAATTCTATGCCGACAACCAGTACGGCAGCAGG
GAGTCTGCAATCAATTCCGGGAACACCGCCTGATTTGCTGCATCCACCCAAAGGAGATGCCTTTGCTCCGAGAAATGAAT
TTGCACTTGACATTGATCTTGAGGAAGAACCGCCGTTTTTCAAAGTCAGTGACTCGCATTATGCAGCTACTTGGCTGCTG
GATGAACGTGCTCCTCAAATCGTGCCCCCAGAAAGGATTTTGAAGCGCTGGGAAAAATGGAGGAGCTTGAAAGGAGAAGA
GCCTAATGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9LCN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

92

100

0.92
  amiE Streptococcus salivarius strain HSISS4

56.069

98.857

0.554
  amiE Streptococcus thermophilus LMG 18311

56.176

97.143

0.546
  amiE Streptococcus thermophilus LMD-9

56.176

97.143

0.546

Multiple sequence alignment