Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FY406_RS04040 Genome accession   NZ_CP043405
Coordinates   823649..824584 (+) Length   311 a.a.
NCBI ID   WP_003090175.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 818649..829584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS04020 (FY406_04020) - 818886..820535 (+) 1650 WP_003090179.1 peptide ABC transporter substrate-binding protein -
  FY406_RS04025 (FY406_04025) - 820637..821551 (+) 915 WP_150880994.1 ABC transporter permease -
  FY406_RS04030 (FY406_04030) - 821562..822593 (+) 1032 WP_003090177.1 ABC transporter permease -
  FY406_RS04035 (FY406_04035) oppD 822604..823656 (+) 1053 WP_003090176.1 ABC transporter ATP-binding protein Regulator
  FY406_RS04040 (FY406_04040) amiF 823649..824584 (+) 936 WP_003090175.1 ABC transporter ATP-binding protein Regulator
  FY406_RS04045 (FY406_04045) - 824587..824988 (+) 402 WP_003090174.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35285.36 Da        Isoelectric Point: 6.5832

>NTDB_id=383562 FY406_RS04040 WP_003090175.1 823649..824584(+) (amiF) [Streptococcus ratti strain ATCC 31377]
MTENRKKLVEVKNVSLIFNKGRSNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDEGEIDFEGQTISNL
KGKELFEFRKKAQMIFQDPQASLNGRMKVRDIIAEGLDTHKLVKNKEERDAKVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISNRIGVMHWGKIVEIGTSDE
VYHHPIHPYTKSLLSAVPEPDPELERKRVHRLYDPAGELDGQAREMREITPGHFVLSTEEEAKAYQKELKL

Nucleotide


Download         Length: 936 bp        

>NTDB_id=383562 FY406_RS04040 WP_003090175.1 823649..824584(+) (amiF) [Streptococcus ratti strain ATCC 31377]
ATGACTGAAAATCGTAAAAAATTGGTGGAAGTCAAAAATGTTTCTTTGATATTTAATAAAGGCAGATCCAATGAAGTCAA
GGCTATTGACAATGTCAGTTTTGATATTTATGAAGGCGAGGTCTTTGGCCTTGTCGGAGAATCCGGCTCAGGTAAGACGA
CTATTGGCCGTGCTATTCTTAAACTCTATAATATTGATGAGGGTGAGATTGACTTTGAGGGGCAGACCATTTCAAACTTG
AAAGGTAAGGAGCTTTTTGAGTTTCGCAAAAAAGCGCAGATGATTTTTCAAGATCCTCAAGCCAGTCTGAATGGACGTAT
GAAAGTTAGAGACATCATCGCTGAAGGTCTTGATACTCATAAATTAGTTAAAAACAAAGAAGAACGTGATGCTAAAGTTC
AAGAACTGCTTGACTTGGTTGGCTTAAATAAGGATCATCTGACACGCTATCCGCATGAGTTTTCAGGCGGTCAGCGGCAG
CGCATCGGAATAGCCCGTGCTTTGGCTGTAGAGCCTAAATTTATTATTGCAGATGAGCCAATCTCTGCTTTGGATGTTTC
CATTCAGGCTCAGGTCGTTAATCTGATGCAGAAACTGCAGCATGAACAAGGGCTGACTTACCTATTCATTGCTCACGACT
TATCTATGGTTAAGTACATTTCCAATCGTATCGGTGTTATGCATTGGGGGAAAATAGTGGAGATTGGTACATCAGACGAA
GTTTACCACCACCCCATTCATCCATACACAAAGAGCCTGTTATCAGCGGTTCCTGAACCCGATCCCGAATTGGAGCGCAA
GCGCGTTCACAGGCTTTATGATCCTGCCGGTGAATTAGACGGACAGGCGCGTGAGATGCGTGAAATCACCCCGGGACATT
TTGTTTTATCTACGGAAGAAGAAGCAAAAGCTTATCAAAAAGAATTAAAACTATAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

57.705

98.071

0.566
  amiF Streptococcus thermophilus LMG 18311

57.377

98.071

0.563
  amiF Streptococcus salivarius strain HSISS4

56.393

98.071

0.553

Multiple sequence alignment