Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | FY406_RS01955 | Genome accession | NZ_CP043405 |
| Coordinates | 413454..415895 (-) | Length | 813 a.a. |
| NCBI ID | WP_126417957.1 | Uniprot ID | - |
| Organism | Streptococcus ratti strain ATCC 31377 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 408454..420895
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FY406_RS01940 (FY406_01940) | hslO | 408811..409683 (+) | 873 | WP_003089759.1 | Hsp33 family molecular chaperone HslO | - |
| FY406_RS01945 (FY406_01945) | dusB | 409670..410647 (+) | 978 | WP_003089761.1 | tRNA dihydrouridine synthase DusB | - |
| FY406_RS01950 (FY406_01950) | - | 410740..413193 (-) | 2454 | WP_404827211.1 | glycoside hydrolase family 68 protein | - |
| FY406_RS10620 | - | 413173..413217 (-) | 45 | Protein_380 | hypothetical protein | - |
| FY406_RS01955 (FY406_01955) | clpC | 413454..415895 (-) | 2442 | WP_126417957.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| FY406_RS01960 (FY406_01960) | - | 415892..416356 (-) | 465 | WP_003089764.1 | CtsR family transcriptional regulator | - |
| FY406_RS01965 (FY406_01965) | tsf | 416719..417759 (-) | 1041 | WP_003089765.1 | translation elongation factor Ts | - |
| FY406_RS01970 (FY406_01970) | rpsB | 417874..418659 (-) | 786 | WP_003089767.1 | 30S ribosomal protein S2 | - |
| FY406_RS01980 (FY406_01980) | - | 419013..419969 (+) | 957 | WP_003089768.1 | S66 peptidase family protein | - |
| FY406_RS01985 (FY406_01985) | - | 420364..420663 (-) | 300 | WP_003089770.1 | rhodanese-like domain-containing protein | - |
Sequence
Protein
Download Length: 813 a.a. Molecular weight: 90482.88 Da Isoelectric Point: 6.3164
>NTDB_id=383550 FY406_RS01955 WP_126417957.1 413454..415895(-) (clpC) [Streptococcus ratti strain ATCC 31377]
MTDYSLKMQEVFRLAQFEAARFESSYLESWHVLLAMVEIDSSVAGLSFAEFENDVQFEDYQTAAILAVGRSPKKPSGEIT
LLEQSNALSRTLSEAYAISQATHAKEVGTEHVLFAMLLNPNLLATRILELVGFQIKDDGESVRLLDLRKAVERYAGFSKE
DIKAIFEMRKPKKNKNNSNFSDLMKPPSMTGELADFTRDLTDLARKGRLEPVIGREKEISRMIQILSRKTKNNPVLVGDA
GVGKTALAYGLAQRIVDSTVPFELADMKVLELDMMSVVAGTRFRGDFEERMNQIIADIEADGHIILFIDELHTIMGSGSG
IDSTLDAANILKPALARGTLRTIGATTQEEYQKHIEKDSALSRRFAKVTIEEPSEEEAYQILLGLKKNYEDYHHVTISAA
AVKTAVRAAHRYLTSKNLPDSAIDLLDEASATVQGLVKKEPPAFLTDLDQAIIDKDIAAARRLLKKEEKPLLKKRISVSE
DAILETLSKLSGIPVSKLTQADSKKYLNLEKKLHKRVIGQDTAISAVSRAIRRNQSGIRMGKRPIGSFMFLGPTGVGKTE
LAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQV
LDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDFSQDYKAMESRILEELKKAYRPEFINRIDEKVVFHN
LSQENMRDVVKIMVQPLVSHLAEQGIVLKFQSSALKHLAQIGYDAEMGARPLRRTLQTEVEDKLAELLLSGELASGQTLK
IGIQKDKLKFDIS
MTDYSLKMQEVFRLAQFEAARFESSYLESWHVLLAMVEIDSSVAGLSFAEFENDVQFEDYQTAAILAVGRSPKKPSGEIT
LLEQSNALSRTLSEAYAISQATHAKEVGTEHVLFAMLLNPNLLATRILELVGFQIKDDGESVRLLDLRKAVERYAGFSKE
DIKAIFEMRKPKKNKNNSNFSDLMKPPSMTGELADFTRDLTDLARKGRLEPVIGREKEISRMIQILSRKTKNNPVLVGDA
GVGKTALAYGLAQRIVDSTVPFELADMKVLELDMMSVVAGTRFRGDFEERMNQIIADIEADGHIILFIDELHTIMGSGSG
IDSTLDAANILKPALARGTLRTIGATTQEEYQKHIEKDSALSRRFAKVTIEEPSEEEAYQILLGLKKNYEDYHHVTISAA
AVKTAVRAAHRYLTSKNLPDSAIDLLDEASATVQGLVKKEPPAFLTDLDQAIIDKDIAAARRLLKKEEKPLLKKRISVSE
DAILETLSKLSGIPVSKLTQADSKKYLNLEKKLHKRVIGQDTAISAVSRAIRRNQSGIRMGKRPIGSFMFLGPTGVGKTE
LAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQV
LDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDFSQDYKAMESRILEELKKAYRPEFINRIDEKVVFHN
LSQENMRDVVKIMVQPLVSHLAEQGIVLKFQSSALKHLAQIGYDAEMGARPLRRTLQTEVEDKLAELLLSGELASGQTLK
IGIQKDKLKFDIS
Nucleotide
Download Length: 2442 bp
>NTDB_id=383550 FY406_RS01955 WP_126417957.1 413454..415895(-) (clpC) [Streptococcus ratti strain ATCC 31377]
ATGACCGATTATTCATTGAAAATGCAGGAAGTTTTCCGGCTGGCTCAGTTTGAAGCTGCCCGCTTTGAAAGCTCCTATCT
TGAAAGCTGGCACGTCCTTCTGGCCATGGTTGAAATTGACAGTTCGGTAGCCGGCCTGAGCTTTGCTGAGTTTGAAAACG
ATGTCCAGTTTGAAGATTATCAGACAGCAGCCATCTTAGCGGTTGGCAGAAGTCCCAAGAAGCCAAGCGGAGAGATTACT
TTATTGGAGCAGTCAAATGCTTTGAGCAGAACCTTATCGGAAGCTTACGCAATCAGTCAGGCAACTCATGCGAAAGAAGT
CGGAACAGAACATGTCTTATTTGCCATGCTGCTCAATCCTAATTTGCTGGCAACACGGATTTTAGAGTTAGTCGGCTTTC
AAATCAAGGACGACGGCGAGTCTGTCCGCCTACTTGACTTGCGCAAGGCTGTTGAACGCTATGCAGGTTTCTCAAAAGAA
GATATCAAAGCCATTTTTGAAATGCGTAAGCCTAAGAAAAACAAGAATAACAGCAATTTCTCCGACTTAATGAAACCGCC
CAGCATGACAGGCGAACTGGCAGATTTCACACGGGATCTGACCGATCTGGCCCGCAAAGGACGTTTGGAGCCTGTTATTG
GCCGGGAAAAGGAAATCTCGCGCATGATTCAGATTTTAAGCCGCAAGACAAAAAATAATCCTGTCTTAGTTGGTGATGCT
GGAGTTGGAAAAACAGCGCTGGCTTACGGACTTGCCCAGCGTATTGTAGACAGCACGGTGCCTTTTGAACTGGCCGATAT
GAAAGTCTTGGAACTGGATATGATGAGTGTTGTAGCCGGAACACGTTTTCGCGGAGACTTTGAAGAGCGTATGAATCAGA
TTATTGCGGATATTGAGGCAGATGGGCACATTATCCTCTTTATTGATGAACTGCATACTATTATGGGCTCAGGCAGCGGA
ATTGACAGCACTTTGGATGCGGCTAATATTCTTAAACCGGCTTTGGCGCGAGGCACCCTCAGAACCATTGGCGCAACAAC
CCAAGAAGAATATCAAAAGCATATTGAAAAGGATTCTGCCCTGTCCCGCCGCTTTGCTAAGGTAACCATTGAAGAGCCGA
GCGAAGAAGAAGCATATCAAATTTTGCTTGGCTTAAAGAAAAATTATGAAGATTATCATCATGTGACGATTTCTGCTGCT
GCTGTCAAAACAGCAGTCAGAGCAGCCCACCGCTACTTGACCAGCAAGAATTTGCCTGATTCGGCTATTGATTTGTTGGA
TGAGGCCAGTGCGACAGTGCAGGGATTGGTGAAAAAAGAGCCCCCGGCCTTTCTGACAGACTTGGATCAAGCCATTATTG
ATAAAGATATAGCTGCTGCCCGCCGTTTATTGAAAAAGGAAGAAAAGCCTCTGCTTAAAAAACGCATTTCAGTCAGCGAA
GATGCGATTTTGGAAACTTTGAGCAAGCTTTCTGGGATTCCGGTAAGTAAACTGACTCAGGCAGACAGCAAAAAGTACCT
CAATCTGGAAAAAAAACTGCATAAGCGTGTTATCGGTCAGGATACAGCGATTTCTGCGGTGAGCCGTGCCATCCGCCGGA
ATCAGTCCGGTATTCGAATGGGAAAACGACCGATTGGCTCCTTTATGTTTCTGGGGCCTACAGGCGTCGGTAAGACGGAA
TTGGCCAAGGCTTTGGCAGAAGTCCTCTTTGATGATGAATCGGCTCTCATTCGTTTTGATATGAGTGAGTATATGGAAAA
ATTTGCTGCTTCGCGCCTTAACGGAGCCCCTCCGGGCTATGTCGGCTATGAAGAAGGGGGAGAGCTGACTGAAAAAGTTC
GCAACAAACCTTATTCTGTGCTGCTCTTTGATGAGGTTGAAAAGGCTCATCCGGATATTTTTAATGTTCTCCTGCAAGTA
CTGGATGATGGGGTTCTGACCGACAGCCGCGGCCGCAAGGTTGATTTTTCAAATACGATTATTATTATGACTTCAAACCT
TGGAGCAACAGCTCTTCGTGATGATAAGACAGTTGGTTTTGGAGCTAAGGATTTTTCTCAGGATTATAAGGCCATGGAAA
GTCGTATTTTAGAGGAACTAAAAAAAGCTTATCGCCCTGAATTTATCAACCGTATTGATGAGAAAGTTGTCTTTCATAAT
CTTAGCCAGGAAAATATGCGTGATGTTGTCAAAATTATGGTGCAGCCATTGGTTAGTCATTTGGCCGAACAAGGTATTGT
TCTGAAATTCCAAAGCTCAGCGCTCAAGCATTTGGCGCAGATAGGCTATGATGCTGAAATGGGTGCACGGCCTTTGCGCA
GAACACTTCAGACAGAAGTAGAAGATAAGCTGGCAGAACTCCTTCTTTCAGGAGAATTAGCCAGCGGACAAACGCTGAAA
ATTGGTATTCAAAAAGATAAGTTGAAATTTGATATTTCTTAA
ATGACCGATTATTCATTGAAAATGCAGGAAGTTTTCCGGCTGGCTCAGTTTGAAGCTGCCCGCTTTGAAAGCTCCTATCT
TGAAAGCTGGCACGTCCTTCTGGCCATGGTTGAAATTGACAGTTCGGTAGCCGGCCTGAGCTTTGCTGAGTTTGAAAACG
ATGTCCAGTTTGAAGATTATCAGACAGCAGCCATCTTAGCGGTTGGCAGAAGTCCCAAGAAGCCAAGCGGAGAGATTACT
TTATTGGAGCAGTCAAATGCTTTGAGCAGAACCTTATCGGAAGCTTACGCAATCAGTCAGGCAACTCATGCGAAAGAAGT
CGGAACAGAACATGTCTTATTTGCCATGCTGCTCAATCCTAATTTGCTGGCAACACGGATTTTAGAGTTAGTCGGCTTTC
AAATCAAGGACGACGGCGAGTCTGTCCGCCTACTTGACTTGCGCAAGGCTGTTGAACGCTATGCAGGTTTCTCAAAAGAA
GATATCAAAGCCATTTTTGAAATGCGTAAGCCTAAGAAAAACAAGAATAACAGCAATTTCTCCGACTTAATGAAACCGCC
CAGCATGACAGGCGAACTGGCAGATTTCACACGGGATCTGACCGATCTGGCCCGCAAAGGACGTTTGGAGCCTGTTATTG
GCCGGGAAAAGGAAATCTCGCGCATGATTCAGATTTTAAGCCGCAAGACAAAAAATAATCCTGTCTTAGTTGGTGATGCT
GGAGTTGGAAAAACAGCGCTGGCTTACGGACTTGCCCAGCGTATTGTAGACAGCACGGTGCCTTTTGAACTGGCCGATAT
GAAAGTCTTGGAACTGGATATGATGAGTGTTGTAGCCGGAACACGTTTTCGCGGAGACTTTGAAGAGCGTATGAATCAGA
TTATTGCGGATATTGAGGCAGATGGGCACATTATCCTCTTTATTGATGAACTGCATACTATTATGGGCTCAGGCAGCGGA
ATTGACAGCACTTTGGATGCGGCTAATATTCTTAAACCGGCTTTGGCGCGAGGCACCCTCAGAACCATTGGCGCAACAAC
CCAAGAAGAATATCAAAAGCATATTGAAAAGGATTCTGCCCTGTCCCGCCGCTTTGCTAAGGTAACCATTGAAGAGCCGA
GCGAAGAAGAAGCATATCAAATTTTGCTTGGCTTAAAGAAAAATTATGAAGATTATCATCATGTGACGATTTCTGCTGCT
GCTGTCAAAACAGCAGTCAGAGCAGCCCACCGCTACTTGACCAGCAAGAATTTGCCTGATTCGGCTATTGATTTGTTGGA
TGAGGCCAGTGCGACAGTGCAGGGATTGGTGAAAAAAGAGCCCCCGGCCTTTCTGACAGACTTGGATCAAGCCATTATTG
ATAAAGATATAGCTGCTGCCCGCCGTTTATTGAAAAAGGAAGAAAAGCCTCTGCTTAAAAAACGCATTTCAGTCAGCGAA
GATGCGATTTTGGAAACTTTGAGCAAGCTTTCTGGGATTCCGGTAAGTAAACTGACTCAGGCAGACAGCAAAAAGTACCT
CAATCTGGAAAAAAAACTGCATAAGCGTGTTATCGGTCAGGATACAGCGATTTCTGCGGTGAGCCGTGCCATCCGCCGGA
ATCAGTCCGGTATTCGAATGGGAAAACGACCGATTGGCTCCTTTATGTTTCTGGGGCCTACAGGCGTCGGTAAGACGGAA
TTGGCCAAGGCTTTGGCAGAAGTCCTCTTTGATGATGAATCGGCTCTCATTCGTTTTGATATGAGTGAGTATATGGAAAA
ATTTGCTGCTTCGCGCCTTAACGGAGCCCCTCCGGGCTATGTCGGCTATGAAGAAGGGGGAGAGCTGACTGAAAAAGTTC
GCAACAAACCTTATTCTGTGCTGCTCTTTGATGAGGTTGAAAAGGCTCATCCGGATATTTTTAATGTTCTCCTGCAAGTA
CTGGATGATGGGGTTCTGACCGACAGCCGCGGCCGCAAGGTTGATTTTTCAAATACGATTATTATTATGACTTCAAACCT
TGGAGCAACAGCTCTTCGTGATGATAAGACAGTTGGTTTTGGAGCTAAGGATTTTTCTCAGGATTATAAGGCCATGGAAA
GTCGTATTTTAGAGGAACTAAAAAAAGCTTATCGCCCTGAATTTATCAACCGTATTGATGAGAAAGTTGTCTTTCATAAT
CTTAGCCAGGAAAATATGCGTGATGTTGTCAAAATTATGGTGCAGCCATTGGTTAGTCATTTGGCCGAACAAGGTATTGT
TCTGAAATTCCAAAGCTCAGCGCTCAAGCATTTGGCGCAGATAGGCTATGATGCTGAAATGGGTGCACGGCCTTTGCGCA
GAACACTTCAGACAGAAGTAGAAGATAAGCTGGCAGAACTCCTTCTTTCAGGAGAATTAGCCAGCGGACAAACGCTGAAA
ATTGGTATTCAAAAAGATAAGTTGAAATTTGATATTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus mutans UA159 |
89.163 |
99.877 |
0.891 |
| clpC | Streptococcus thermophilus LMD-9 |
72.883 |
100 |
0.731 |
| clpC | Streptococcus thermophilus LMG 18311 |
72.883 |
100 |
0.731 |
| clpC | Streptococcus pneumoniae TIGR4 |
68.059 |
100 |
0.681 |
| clpC | Streptococcus pneumoniae Rx1 |
68.059 |
100 |
0.681 |
| clpC | Streptococcus pneumoniae D39 |
68.059 |
100 |
0.681 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.519 |
100 |
0.507 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
43.938 |
100 |
0.45 |
| clpE | Streptococcus mutans UA159 |
47.588 |
76.507 |
0.364 |
| clpE | Streptococcus pneumoniae TIGR4 |
46.677 |
77.737 |
0.363 |
| clpE | Streptococcus pneumoniae Rx1 |
46.519 |
77.737 |
0.362 |
| clpE | Streptococcus pneumoniae D39 |
46.519 |
77.737 |
0.362 |
| clpE | Streptococcus pneumoniae R6 |
46.519 |
77.737 |
0.362 |