Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   FY406_RS01790 Genome accession   NZ_CP043405
Coordinates   374516..375451 (-) Length   311 a.a.
NCBI ID   WP_003089706.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 369516..380451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS01775 (FY406_01775) ulaG 370801..371892 (-) 1092 WP_150880977.1 L-ascorbate 6-phosphate lactonase -
  FY406_RS01785 (FY406_01785) - 372421..374103 (-) 1683 WP_003089705.1 transcription antiterminator -
  FY406_RS01790 (FY406_01790) comB/nlmE 374516..375451 (-) 936 WP_003089706.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  FY406_RS01795 (FY406_01795) comA/nlmT 375465..377753 (-) 2289 WP_003089707.1 peptide cleavage/export ABC transporter Regulator
  FY406_RS01800 (FY406_01800) - 378498..378779 (-) 282 WP_003089709.1 hypothetical protein -
  FY406_RS01805 (FY406_01805) - 378914..379324 (-) 411 WP_003089710.1 hypothetical protein -
  FY406_RS01810 (FY406_01810) - 379348..379557 (-) 210 WP_027975134.1 Blp family class II bacteriocin -
  FY406_RS01815 (FY406_01815) - 379721..379930 (-) 210 WP_003089714.1 hypothetical protein -
  FY406_RS01820 (FY406_01820) - 379971..380300 (-) 330 WP_003089716.1 hypothetical protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35242.76 Da        Isoelectric Point: 10.5001

>NTDB_id=383548 FY406_RS01790 WP_003089706.1 374516..375451(-) (comB/nlmE) [Streptococcus ratti strain ATCC 31377]
MDPKFLQSAEFYRRRYHNFATLLIIPLVCLIIFIAVFLCFAKKEITVTSTGEVAPTRVVSVIQSYSDTSIIKNNLDNNAS
VKKGDLLIQYSETADSKRRAEQKKIVEERQKRAKEAKKQEQKTDKKASKKKSEKKSESKDSKKDTDNKDSKKKKTEKKNS
GDGDEIKKVSIFASDDGIIHTNPKYEGMNLMPKGAEIGQLYPDIRKTKKVLITYYVSSDDVVSMKKGQKTRLSMERKGND
RITLEGKISTVALSATKTKNGNLFKVTAKVTVSKKDSKLVKYGMTGKTVTVTDKKTYFNYFKDKLLNKLDN

Nucleotide


Download         Length: 936 bp        

>NTDB_id=383548 FY406_RS01790 WP_003089706.1 374516..375451(-) (comB/nlmE) [Streptococcus ratti strain ATCC 31377]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTCGCGACCCTGCTGATTATTCCTTT
AGTCTGTCTGATTATCTTTATCGCAGTGTTTCTTTGCTTTGCTAAAAAAGAGATAACTGTCACATCCACAGGTGAAGTAG
CTCCGACAAGAGTAGTATCGGTTATTCAATCCTACAGTGATACCTCTATCATCAAAAATAATTTGGATAACAATGCCAGT
GTTAAAAAAGGCGATCTGCTGATTCAGTATTCAGAAACGGCTGATTCTAAGCGTCGGGCTGAACAAAAGAAGATTGTAGA
AGAAAGACAAAAGCGAGCTAAAGAAGCAAAAAAACAAGAGCAGAAAACAGATAAAAAAGCTAGCAAGAAAAAATCCGAAA
AGAAATCTGAAAGCAAAGACTCTAAAAAAGATACTGACAATAAAGACAGTAAGAAAAAGAAGACAGAAAAGAAAAATTCG
GGTGATGGGGATGAAATCAAGAAAGTTTCTATCTTTGCTTCAGACGATGGAATTATCCATACCAACCCCAAGTATGAAGG
GATGAACCTTATGCCTAAAGGGGCTGAAATTGGGCAGCTCTACCCTGACATTAGAAAGACTAAGAAAGTTTTAATCACCT
ACTATGTCTCTTCTGATGATGTTGTTTCTATGAAGAAGGGGCAAAAGACTAGGCTTTCTATGGAAAGAAAGGGCAACGAC
AGGATTACTCTTGAAGGTAAAATTAGTACTGTTGCCTTATCAGCTACCAAGACTAAAAACGGCAATCTCTTTAAGGTGAC
AGCTAAAGTAACGGTTTCTAAAAAAGACAGTAAGCTGGTTAAATATGGTATGACCGGCAAAACAGTTACGGTAACTGATA
AAAAGACCTATTTTAACTACTTTAAAGACAAGCTTCTAAACAAGCTTGACAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(171-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

69.775

100

0.698

Multiple sequence alignment