Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FX981_RS15560 Genome accession   NZ_CP043404
Coordinates   3070406..3072139 (+) Length   577 a.a.
NCBI ID   WP_025092992.1    Uniprot ID   A0A5C0WLT9
Organism   Bacillus safensis strain PgKB20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3065406..3077139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS15535 (FX981_03122) - 3065510..3065770 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  FX981_RS15540 (FX981_03123) - 3065754..3066650 (+) 897 WP_206698652.1 polyprenyl synthetase family protein -
  FX981_RS15545 (FX981_03124) dxs 3066801..3068702 (+) 1902 WP_024428010.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FX981_RS15550 (FX981_03125) - 3068699..3069553 (+) 855 WP_025092991.1 TlyA family RNA methyltransferase -
  FX981_RS15555 (FX981_03126) ahrC 3069923..3070372 (+) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  FX981_RS15560 (FX981_03127) recN 3070406..3072139 (+) 1734 WP_025092992.1 DNA repair protein RecN Machinery gene
  FX981_RS15565 (FX981_03128) spoIVB 3072340..3073617 (+) 1278 WP_025092993.1 SpoIVB peptidase -
  FX981_RS15570 (FX981_03129) spo0A 3073902..3074705 (+) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  FX981_RS15580 (FX981_03131) - 3075161..3076261 (+) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64683.50 Da        Isoelectric Point: 4.7728

>NTDB_id=383529 FX981_RS15560 WP_025092992.1 3070406..3072139(+) (recN) [Bacillus safensis strain PgKB20]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEDIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=383529 FX981_RS15560 WP_025092992.1 3070406..3072139(+) (recN) [Bacillus safensis strain PgKB20]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGATCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCACCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAATAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGACATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AGGAAGAACGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCGTATAACGCCTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAACGATGATTTGAAAAAGCT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTTCAAATGCGGAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGCTAAAACGAAAATACGGCACAACCGTT
GAAGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGACGCCCTGCTCGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATCCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTGCAGCTCGGGAAAAATGGAATCGACCA
AGCCCAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCATGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WLT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757

Multiple sequence alignment