Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | FX981_RS15375 | Genome accession | NZ_CP043404 |
| Coordinates | 3039428..3039763 (-) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus safensis strain PgKB20 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3034428..3044763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FX981_RS15325 (FX981_03080) | comGC | 3034637..3034930 (+) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FX981_RS15330 (FX981_03081) | comGD | 3034923..3035369 (+) | 447 | WP_149126476.1 | competence type IV pilus minor pilin ComGD | - |
| FX981_RS19605 (FX981_03082) | comGE | 3035353..3035667 (+) | 315 | WP_149126477.1 | competence type IV pilus minor pilin ComGE | - |
| FX981_RS15340 (FX981_03083) | comGF | 3035654..3036106 (+) | 453 | WP_187470543.1 | competence type IV pilus minor pilin ComGF | - |
| FX981_RS15345 (FX981_03084) | - | 3036103..3036486 (+) | 384 | WP_073206276.1 | competence type IV pilus minor pilin ComGG | - |
| FX981_RS15350 (FX981_03085) | - | 3036546..3036740 (+) | 195 | WP_149126478.1 | YqzE family protein | - |
| FX981_RS15355 (FX981_03086) | - | 3036775..3037053 (-) | 279 | WP_171464609.1 | DUF3889 domain-containing protein | - |
| FX981_RS15360 (FX981_03087) | tapA | 3037353..3037880 (+) | 528 | WP_024422972.1 | amyloid fiber anchoring/assembly protein TapA | - |
| FX981_RS15365 (FX981_03088) | sipW | 3037933..3038505 (+) | 573 | WP_024422971.1 | signal peptidase I SipW | - |
| FX981_RS15370 (FX981_03089) | tasA | 3038560..3039360 (+) | 801 | WP_024422970.1 | biofilm matrix protein TasA | - |
| FX981_RS15375 (FX981_03090) | sinR | 3039428..3039763 (-) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| FX981_RS15380 (FX981_03091) | - | 3039797..3039961 (-) | 165 | WP_073206269.1 | anti-repressor SinI family protein | - |
| FX981_RS15385 (FX981_03092) | - | 3040143..3040940 (-) | 798 | WP_024422968.1 | YqhG family protein | - |
| FX981_RS15390 (FX981_03093) | - | 3040955..3042625 (-) | 1671 | WP_024422967.1 | DEAD/DEAH box helicase | - |
| FX981_RS15395 (FX981_03094) | gcvT | 3043187..3044284 (+) | 1098 | WP_024427995.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=383528 FX981_RS15375 WP_024422969.1 3039428..3039763(-) (sinR) [Bacillus safensis strain PgKB20]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=383528 FX981_RS15375 WP_024422969.1 3039428..3039763(-) (sinR) [Bacillus safensis strain PgKB20]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |