Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HGI44_RS04890 | Genome accession | NZ_CP051291 |
| Coordinates | 1013948..1014208 (+) | Length | 86 a.a. |
| NCBI ID | WP_202136113.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-002 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1008948..1019208
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI44_RS04870 (HGI44_04865) | - | 1009017..1010893 (-) | 1877 | Protein_957 | dynamin family protein | - |
| HGI44_RS04875 (HGI44_04870) | - | 1010964..1011728 (+) | 765 | WP_202135306.1 | hypothetical protein | - |
| HGI44_RS04880 (HGI44_04875) | - | 1011739..1013655 (+) | 1917 | WP_202135307.1 | hypothetical protein | - |
| HGI44_RS04885 (HGI44_04880) | - | 1013645..1013947 (+) | 303 | WP_000649845.1 | TrbC/VirB2 family protein | - |
| HGI44_RS04890 (HGI44_04885) | comB3 | 1013948..1014208 (+) | 261 | WP_202136113.1 | virB3 type IV secretion protein | Machinery gene |
| HGI44_RS04895 (HGI44_04890) | - | 1014221..1015006 (+) | 786 | Protein_962 | DNA transfer protein | - |
| HGI44_RS04900 (HGI44_04895) | tnpA | 1015132..1015548 (-) | 417 | WP_202135308.1 | IS200/IS605 family transposase | - |
| HGI44_RS04905 (HGI44_04900) | - | 1015585..1016931 (+) | 1347 | WP_202136114.1 | RNA-guided endonuclease TnpB family protein | - |
| HGI44_RS04915 (HGI44_04905) | - | 1016970..1018683 (+) | 1714 | Protein_965 | type IV secretion system DNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 10156.01 Da Isoelectric Point: 4.6082
>NTDB_id=383527 HGI44_RS04890 WP_202136113.1 1013948..1014208(+) (comB3) [Helicobacter pylori strain ASHA-002]
MILNYAETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA
MILNYAETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA
Nucleotide
Download Length: 261 bp
>NTDB_id=383527 HGI44_RS04890 WP_202136113.1 1013948..1014208(+) (comB3) [Helicobacter pylori strain ASHA-002]
ATGATTTTAAATTATGCAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
ATGATTTTAAATTATGCAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
45.977 |
100 |
0.465 |