Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FX981_RS15325 Genome accession   NZ_CP043404
Coordinates   3034637..3034930 (+) Length   97 a.a.
NCBI ID   WP_024422977.1    Uniprot ID   A0A0M2EIN6
Organism   Bacillus safensis strain PgKB20     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3029637..3039930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS15290 (FX981_03073) - 3029727..3030365 (+) 639 WP_024422981.1 MBL fold metallo-hydrolase -
  FX981_RS15295 (FX981_03074) - 3030413..3030655 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  FX981_RS15300 (FX981_03075) - 3030869..3031249 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  FX981_RS15310 (FX981_03077) - 3031473..3032348 (+) 876 WP_024422979.1 STAS domain-containing protein -
  FX981_RS15315 (FX981_03078) comGA 3032529..3033599 (+) 1071 WP_025092972.1 competence type IV pilus ATPase ComGA Machinery gene
  FX981_RS15320 (FX981_03079) comGB 3033580..3034620 (+) 1041 WP_103131948.1 competence type IV pilus assembly protein ComGB -
  FX981_RS15325 (FX981_03080) comGC 3034637..3034930 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  FX981_RS15330 (FX981_03081) comGD 3034923..3035369 (+) 447 WP_149126476.1 competence type IV pilus minor pilin ComGD -
  FX981_RS19605 (FX981_03082) comGE 3035353..3035667 (+) 315 WP_149126477.1 competence type IV pilus minor pilin ComGE -
  FX981_RS15340 (FX981_03083) comGF 3035654..3036106 (+) 453 WP_187470543.1 competence type IV pilus minor pilin ComGF -
  FX981_RS15345 (FX981_03084) - 3036103..3036486 (+) 384 WP_073206276.1 competence type IV pilus minor pilin ComGG -
  FX981_RS15350 (FX981_03085) - 3036546..3036740 (+) 195 WP_149126478.1 YqzE family protein -
  FX981_RS15355 (FX981_03086) - 3036775..3037053 (-) 279 WP_171464609.1 DUF3889 domain-containing protein -
  FX981_RS15360 (FX981_03087) tapA 3037353..3037880 (+) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  FX981_RS15365 (FX981_03088) sipW 3037933..3038505 (+) 573 WP_024422971.1 signal peptidase I SipW -
  FX981_RS15370 (FX981_03089) tasA 3038560..3039360 (+) 801 WP_024422970.1 biofilm matrix protein TasA -
  FX981_RS15375 (FX981_03090) sinR 3039428..3039763 (-) 336 WP_024422969.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.62 Da        Isoelectric Point: 7.3218

>NTDB_id=383527 FX981_RS15325 WP_024422977.1 3034637..3034930(+) (comGC) [Bacillus safensis strain PgKB20]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGNVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=383527 FX981_RS15325 WP_024422977.1 3034637..3034930(+) (comGC) [Bacillus safensis strain PgKB20]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATAGTTATGCTCGTAATATCCATTCTTTTACTCATTACCATACC
GAATATCACACGTCATCACCAAGCGATTCAGGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTCAGCACACAAGTGATGG
CATATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGGTTAACT
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCAACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2EIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.222

92.784

0.392
  comGC Staphylococcus aureus N315

42.222

92.784

0.392

Multiple sequence alignment