Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FX981_RS12095 Genome accession   NZ_CP043404
Coordinates   2436161..2436802 (+) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain PgKB20     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2431161..2441802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS12070 (FX981_02427) - 2431547..2431903 (-) 357 WP_024425946.1 hypothetical protein -
  FX981_RS12075 (FX981_02428) degQ 2432409..2432549 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  FX981_RS12080 (FX981_02429) - 2432701..2433624 (+) 924 WP_024425945.1 polyprenyl synthetase family protein -
  FX981_RS12085 (FX981_02430) comX 2433602..2433775 (+) 174 WP_024425944.1 competence pheromone ComX -
  FX981_RS12090 (FX981_02431) comP 2433789..2436080 (+) 2292 WP_024425943.1 ATP-binding protein Regulator
  FX981_RS12095 (FX981_02432) comA 2436161..2436802 (+) 642 WP_024423322.1 response regulator transcription factor Regulator
  FX981_RS12100 (FX981_02433) - 2436826..2437215 (+) 390 WP_024423321.1 hotdog fold thioesterase -
  FX981_RS12105 (FX981_02434) mnhG 2437306..2437680 (-) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  FX981_RS12110 (FX981_02435) - 2437664..2437945 (-) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  FX981_RS12115 (FX981_02436) - 2437945..2438424 (-) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  FX981_RS12120 (FX981_02437) - 2438431..2439909 (-) 1479 WP_024425940.1 Na+/H+ antiporter subunit D -
  FX981_RS12125 (FX981_02438) - 2439902..2440243 (-) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  FX981_RS12130 (FX981_02439) - 2440243..2440674 (-) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=383516 FX981_RS12095 WP_024423322.1 2436161..2436802(+) (comA) [Bacillus safensis strain PgKB20]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=383516 FX981_RS12095 WP_024423322.1 2436161..2436802(+) (comA) [Bacillus safensis strain PgKB20]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723

Multiple sequence alignment