Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R2866_RS07170 Genome accession   NC_017451
Coordinates   1468836..1469501 (+) Length   221 a.a.
NCBI ID   WP_020910156.1    Uniprot ID   -
Organism   Haemophilus influenzae R2866     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1463836..1474501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2866_RS07145 (R2866_1424) crp 1465375..1466049 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  R2866_RS07150 (R2866_1425) - 1466034..1466285 (-) 252 WP_005647999.1 YheU family protein -
  R2866_RS07155 (R2866_1426) slmA 1466307..1466963 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  R2866_RS07160 (R2866_1427) dut 1466967..1467422 (-) 456 WP_005631431.1 dUTP diphosphatase -
  R2866_RS07165 (R2866_1428) coaBC 1467470..1468672 (-) 1203 WP_005666020.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  R2866_RS07170 (R2866_1429) radC 1468836..1469501 (+) 666 WP_020910156.1 RadC family protein Machinery gene
  R2866_RS07175 (R2866_1430) rpmB 1469715..1469951 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  R2866_RS07180 (R2866_1431) rpmG 1469963..1470133 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  R2866_RS07185 (R2866_1432) - 1470481..1471845 (+) 1365 WP_005648009.1 diaminobutyrate--2-oxoglutarate transaminase -
  R2866_RS07190 (R2866_1433) vapB2 1471992..1472225 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  R2866_RS07195 (R2866_1434) vapC 1472225..1472623 (+) 399 WP_005648013.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  R2866_RS07200 (R2866_1435) ddc 1472643..1474178 (+) 1536 WP_005648022.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25057.32 Da        Isoelectric Point: 6.6022

>NTDB_id=38345 R2866_RS07170 WP_020910156.1 1468836..1469501(+) (radC) [Haemophilus influenzae R2866]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQESAELMEIRVLDHLIVGKTDCYSFAENFLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=38345 R2866_RS07170 WP_020910156.1 1468836..1469501(+) (radC) [Haemophilus influenzae R2866]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAGGAGTCAGCAGAACTAATGGAAATCAGAGTGCTTGATCACCTAATTGTCGGGAAAACAGATTGCTATT
CTTTTGCAGAGAACTTTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(100-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

97.285

100

0.973
  radC Streptococcus pneumoniae TIGR4

37.559

96.38

0.362

Multiple sequence alignment