Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HF907_RS08710 Genome accession   NZ_CP051173
Coordinates   1835784..1836407 (+) Length   207 a.a.
NCBI ID   WP_011001144.1    Uniprot ID   Q8Y050
Organism   Ralstonia pseudosolanacearum strain UW763     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1830784..1841407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF907_RS08700 (HF907_08735) - 1833047..1835233 (+) 2187 WP_043897692.1 DNA polymerase III subunit gamma/tau -
  HF907_RS08705 (HF907_08740) - 1835330..1835677 (+) 348 WP_011001142.1 YbaB/EbfC family nucleoid-associated protein -
  HF907_RS08710 (HF907_08745) recR 1835784..1836407 (+) 624 WP_011001144.1 recombination mediator RecR Machinery gene
  HF907_RS08715 (HF907_08750) - 1836430..1837851 (-) 1422 WP_016722157.1 carbohydrate porin -
  HF907_RS08720 (HF907_08755) - 1838014..1838934 (+) 921 WP_011001146.1 LysR substrate-binding domain-containing protein -
  HF907_RS08725 (HF907_08760) - 1838967..1840175 (+) 1209 WP_064477768.1 CaiB/BaiF CoA transferase family protein -
  HF907_RS08730 (HF907_08765) - 1840270..1841319 (+) 1050 WP_016722154.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22509.89 Da        Isoelectric Point: 6.2270

>NTDB_id=383080 HF907_RS08710 WP_011001144.1 1835784..1836407(+) (recR) [Ralstonia pseudosolanacearum strain UW763]
MMRGGPGTPSALQMLIEALRVLPGVGPKSAQRMAYHLLQHDREGASRLAEALAEAAESIHHCSRCNTFTEQDVCETCLDP
RRDASVLCVVETPADQMMIEQTLTYRGQYFVLMGRLSPLDNIGPKEIHLERLLARATDPALGGPCAEVILATNFTSEGEA
TAHYIGEMLKARGIKVSRLARGVPVGGELEYVDAGTIARAVLDRRQL

Nucleotide


Download         Length: 624 bp        

>NTDB_id=383080 HF907_RS08710 WP_011001144.1 1835784..1836407(+) (recR) [Ralstonia pseudosolanacearum strain UW763]
ATGATGCGCGGCGGTCCGGGCACGCCATCGGCGCTGCAGATGCTGATCGAGGCCTTGCGCGTGCTGCCGGGCGTGGGGCC
GAAGTCTGCGCAGCGCATGGCCTATCACCTGCTGCAGCATGACCGCGAAGGCGCGTCGCGGCTGGCCGAAGCGCTGGCCG
AAGCGGCCGAGTCGATCCACCATTGCAGCCGCTGCAACACCTTCACCGAGCAGGATGTCTGCGAGACCTGCCTGGACCCG
CGCCGCGACGCCTCGGTGCTGTGCGTGGTGGAAACGCCCGCCGACCAGATGATGATCGAGCAGACGCTGACCTACCGCGG
CCAGTATTTCGTGCTGATGGGGCGGCTCTCGCCGCTGGACAACATCGGCCCCAAGGAAATCCACCTCGAGCGCCTGCTGG
CCCGGGCGACCGATCCGGCGCTGGGCGGGCCGTGCGCCGAAGTCATTCTCGCCACCAACTTCACCAGCGAGGGCGAGGCC
ACCGCGCACTACATCGGCGAGATGCTCAAGGCGCGCGGCATCAAGGTGTCGCGGCTGGCGCGCGGTGTGCCGGTGGGCGG
CGAGCTGGAATACGTGGACGCGGGCACCATCGCCCGCGCGGTGCTGGACCGGCGCCAGCTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(85-180)

RecR protein (RecR_ZnF)

(45-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y050

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.734

96.135

0.449
  recR Bacillus subtilis subsp. subtilis str. 168

46.231

96.135

0.444
  recR Streptococcus pneumoniae R6

38.693

96.135

0.372