Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HF908_RS11745 Genome accession   NZ_CP051171
Coordinates   2521327..2521950 (-) Length   207 a.a.
NCBI ID   WP_408005011.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2279     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2516327..2526950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF908_RS11725 (HF908_11800) - 2516416..2517465 (-) 1050 WP_016722154.1 ABC transporter substrate-binding protein -
  HF908_RS11730 (HF908_11805) - 2517560..2518768 (-) 1209 WP_193025924.1 CaiB/BaiF CoA transferase family protein -
  HF908_RS11735 (HF908_11810) - 2518801..2519721 (-) 921 WP_193025925.1 LysR family transcriptional regulator -
  HF908_RS11740 (HF908_11815) - 2519884..2521305 (+) 1422 WP_193025926.1 carbohydrate porin -
  HF908_RS11745 (HF908_11820) recR 2521327..2521950 (-) 624 WP_408005011.1 recombination mediator RecR Machinery gene
  HF908_RS11750 (HF908_11825) - 2522057..2522404 (-) 348 WP_011001142.1 YbaB/EbfC family nucleoid-associated protein -
  HF908_RS11755 (HF908_11830) - 2522501..2524702 (-) 2202 WP_193025927.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22493.89 Da        Isoelectric Point: 6.2270

>NTDB_id=383024 HF908_RS11745 WP_408005011.1 2521327..2521950(-) (recR) [Ralstonia pseudosolanacearum strain RUN2279]
MMRGGPGTPSALQMLIEALRVLPGVGPKSAQRMAYHLLQHDREGASRLAEALAEAAESIHHCSRCNTFTEQDVCETCLDP
RRDAAVLCVVETPADQMMIEQTLTYRGQYFVLMGRLSPLDNIGPKEIHLERLLARATDPALGGPCAEVILATNFTSEGEA
TAHYIGEMLKARGIKVSRLARGVPVGGELEYVDAGTIARAVLDRRQL

Nucleotide


Download         Length: 624 bp        

>NTDB_id=383024 HF908_RS11745 WP_408005011.1 2521327..2521950(-) (recR) [Ralstonia pseudosolanacearum strain RUN2279]
ATGATGCGCGGCGGTCCGGGTACGCCATCGGCGCTGCAGATGCTGATCGAGGCCTTGCGCGTGCTGCCTGGCGTGGGGCC
GAAGTCTGCGCAGCGCATGGCCTATCACCTGCTGCAGCATGACCGCGAAGGCGCGTCGCGGCTGGCCGAAGCGCTGGCCG
AGGCGGCCGAGTCGATCCACCATTGCAGCCGCTGCAACACCTTCACCGAGCAGGACGTCTGCGAGACCTGCCTGGACCCG
CGCCGCGACGCCGCGGTGCTGTGCGTGGTGGAAACGCCCGCCGACCAGATGATGATCGAGCAGACGCTGACCTATCGCGG
CCAGTATTTCGTGCTGATGGGGCGGCTCTCGCCGCTGGACAACATCGGCCCCAAGGAAATCCACCTCGAGCGCCTGCTGG
CCCGGGCGACCGATCCGGCGCTGGGCGGGCCGTGCGCCGAAGTCATTCTCGCCACCAACTTCACCAGCGAGGGCGAGGCC
ACCGCGCACTACATCGGCGAGATGCTCAAGGCGCGCGGCATCAAGGTGTCGCGGCTGGCGCGCGGTGTGCCGGTGGGCGG
CGAGCTGGAATACGTGGACGCGGGCACCATCGCCCGCGCGGTGCTGGACCGGCGCCAGCTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(86-180)

RecR protein (RecR_ZnF)

(45-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.734

96.135

0.449
  recR Bacillus subtilis subsp. subtilis str. 168

45.729

96.135

0.44
  recR Streptococcus pneumoniae R6

38.693

96.135

0.372