Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SP670_RS08195 Genome accession   NC_014498
Coordinates   1544817..1546049 (-) Length   410 a.a.
NCBI ID   WP_000106342.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 670-6B     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539817..1551049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS08165 (SP670_1648) - 1540004..1540972 (+) 969 WP_000081006.1 NAD(P)/FAD-dependent oxidoreductase -
  SP670_RS08170 (SP670_1649) whiA 1541006..1541917 (-) 912 WP_000011274.1 DNA-binding protein WhiA -
  SP670_RS08175 (SP670_1650) - 1541914..1542891 (-) 978 WP_001231091.1 YvcK family protein -
  SP670_RS08180 (SP670_1651) rapZ 1542888..1543778 (-) 891 WP_000163033.1 RNase adapter RapZ -
  SP670_RS08185 (SP670_1652) - 1543830..1544210 (-) 381 WP_001140412.1 RidA family protein -
  SP670_RS08190 (SP670_1653) yihA 1544221..1544808 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SP670_RS08195 (SP670_1654) clpX 1544817..1546049 (-) 1233 WP_000106342.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SP670_RS08200 (SP670_1655) - 1546081..1546251 (-) 171 WP_000442276.1 hypothetical protein -
  SP670_RS08205 (SP670_1656) - 1546251..1546757 (-) 507 WP_000162442.1 dihydrofolate reductase -
  SP670_RS08210 (SP670_1657) - 1546887..1547405 (-) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  SP670_RS08215 (SP670_1658) lytC 1547902..1549406 (-) 1505 Protein_1579 choline binding-anchored murein hydrolase LytC -
  SP670_RS08220 (SP670_1659) tpiA 1549444..1550202 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  SP670_RS08225 (SP670_1660) - 1550300..1550977 (-) 678 WP_000221604.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45770.30 Da        Isoelectric Point: 4.4550

>NTDB_id=38301 SP670_RS08195 WP_000106342.1 1544817..1546049(-) (clpX) [Streptococcus pneumoniae 670-6B]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=38301 SP670_RS08195 WP_000106342.1 1544817..1546049(-) (clpX) [Streptococcus pneumoniae 670-6B]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
CGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTGGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTTATCGGTCAAGATCGT
GCCAAGCGTGCTTTGGCAGTGGCAGTTTACAACCACTACAAACGTATCAACTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAATCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTAGCTA
AGAGTTTAAATGTACCTTTTGCCATTGCAGATGCGACAGCTCTTACTGAGGCTGGTTATGTAGGTGAGGACGTGGAAAAT
ATCCTCCTTAAACTCTTGCAGGCTGCTGACTTTAATATCGAGCGTGCAGAGCGTGGGATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGTGACGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAGGCGATTGACGAAAACAGCTCATATATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACTTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment