Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HF908_RS03860 Genome accession   NZ_CP051171
Coordinates   816919..819111 (+) Length   730 a.a.
NCBI ID   WP_193027625.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2279     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 811919..824111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF908_RS03840 (HF908_03885) secD 812166..814046 (-) 1881 WP_193027624.1 protein translocase subunit SecD -
  HF908_RS03845 (HF908_03890) yajC 814168..814497 (-) 330 WP_193028431.1 preprotein translocase subunit YajC -
  HF908_RS03850 (HF908_03895) tgt 814609..815760 (-) 1152 WP_020747569.1 tRNA guanosine(34) transglycosylase Tgt -
  HF908_RS03855 (HF908_03900) queA 815754..816842 (-) 1089 WP_020747570.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HF908_RS03860 (HF908_03905) recG 816919..819111 (+) 2193 WP_193027625.1 ATP-dependent DNA helicase RecG Machinery gene
  HF908_RS26230 (HF908_03910) - 819108..819332 (-) 225 WP_230643340.1 GDCCVxC domain-containing (seleno)protein -
  HF908_RS03865 (HF908_03915) - 819344..819784 (-) 441 WP_020747573.1 hypothetical protein -
  HF908_RS03870 (HF908_03920) - 820008..820181 (-) 174 WP_020747574.1 hypothetical protein -
  HF908_RS03875 (HF908_03925) - 820325..821455 (-) 1131 WP_193027626.1 DSD1 family PLP-dependent enzyme -
  HF908_RS03880 (HF908_03930) - 821598..822536 (+) 939 WP_193027627.1 LysR family transcriptional regulator -
  HF908_RS03885 (HF908_03935) - 822689..823912 (-) 1224 WP_193027628.1 diaminopropionate ammonia-lyase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79100.13 Da        Isoelectric Point: 9.4756

>NTDB_id=383000 HF908_RS03860 WP_193027625.1 816919..819111(+) (recG) [Ralstonia pseudosolanacearum strain RUN2279]
MPARARSATAAVPAPDTDAAPAAGPRRARAAKPADKPAAKTARPADKLAKLGLRRDVDLVLHLPMRYEDETALLTIAEAV
ARANTGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMAEGARLRVRGEVRGGFFGAEMVHPAV
RAVAPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLHGPLASLKLMAPAEAVRLLHQPTPDVDEYS
LVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFVAALPFKLTGAQARVWEEISADLARPYPM
QRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAG
TAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTGTPIAETAQLVPHQLMMSATPIPRTLAMTYYAD
LDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLV
HGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLS
PTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPDAVEAHLKRW
LGEREHYLRV

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=383000 HF908_RS03860 WP_193027625.1 816919..819111(+) (recG) [Ralstonia pseudosolanacearum strain RUN2279]
GTGCCCGCTCGCGCCCGCTCCGCCACCGCCGCCGTTCCCGCGCCCGATACCGACGCGGCGCCGGCCGCCGGCCCCAGGCG
CGCGCGCGCGGCAAAGCCCGCGGACAAGCCGGCCGCCAAGACCGCCCGCCCCGCCGACAAGCTGGCCAAGCTCGGCCTGC
GCCGCGACGTCGATCTCGTGCTGCACCTGCCGATGCGCTACGAGGACGAAACCGCGCTGCTGACCATCGCCGAAGCCGTC
GCCCGCGCCAATACTGGCTGGGCCGCGCAGGTGGATGGGGTGGTGACGCGCAACGAAGTGGCGTTCCGGCCGCGCCGGCA
GCTGGTAGTGCATATCGCCGACGATTCCGGCGAGCTGGTGCTGCGCTTTCTCAATTTCTACGGCAGCCAGGTCAAGCAGA
TGGCCGAGGGCGCGCGCCTGCGCGTGCGCGGTGAGGTGCGCGGCGGTTTCTTCGGCGCGGAGATGGTGCATCCGGCGGTG
CGCGCCGTGGCGCCGGATGAGCCGCTGCCCGACCGTCTGACCCCGGTCTATCCCAGCACCGCCGGCGTGGCGCAGGCGTA
TCTGCGCAAGGCCATCCTGAACGCGCTCGGTCGCACGCCGCTGCCCGAGACCCTGCCGGACAGCCTGTTGCACGGGCCGC
TGGCGTCGCTCAAGCTGATGGCGCCCGCCGAGGCCGTCCGCCTGCTGCACCAGCCCACGCCCGACGTGGACGAGTACAGC
CTGGTCGAGCGCACCCACCCGGCCTGGCTGCGCATCAAGTTCGACGAACTGCTGGCGCAGCAGCTCTCGCTCAAGCGCGC
CCAGGCCGCGCGCCGCACGCGCAGCGCGCCGGTGCTGCGGGCCGGCGGCGCGGACGGATTGCTCGCGCGCTTCGTGGCGG
CGCTGCCCTTCAAGCTGACCGGCGCGCAGGCCCGCGTGTGGGAGGAGATCAGCGCGGACCTCGCCCGGCCGTACCCGATG
CAGCGGCTGCTGCAGGGCGACGTGGGCAGCGGCAAGACCGTCATCGCCGCGCTGGCCGCGTGCCAGGCCATCGACGCCGG
CCGGCAGGCCGCGCTGATGGCGCCGACCGAACTGCTGGCCGAGCAGCACTACCGCAAGCTGTCGGCCTGGCTCGCGCCGC
TGGGCGTGGACATCGTCTGGCTGGCTGGCAGTCTCAAGCGCAAGCAGAAGGACGAGGCCGCCGCGCGCGTGGCCGCCGGC
ACCGCGCAGCTGGTGATCGGCACCCATGCGCTGATCCAGGACACCGTGACCTTCGCCCGCCTGGGGCTGGCCGTGGTGGA
TGAGCAGCATCGCTTTGGCGTGGCGCAGCGGCTGGCGCTGCGCGGCAAGGCCGGCGGCACCGGCACGCCCATCGCCGAGA
CCGCGCAGTTGGTGCCGCACCAGCTGATGATGTCGGCCACACCGATCCCGCGCACGCTGGCGATGACGTACTACGCCGAC
CTCGACGTCTCGGCCATCGACGAGCTGCCGCCCGGCCGCACGCCGGTGGTCACGCGCCTGGTCAACGATGCGCGCCGCGA
CGAGGTGATCGAACGCATCCACGCCGCCGCGCGCGAGGGGCGGCAGGTCTACTGGGTCTGTCCCCTGATTGAAGAAAGCG
AGGCGCTGCAGCTGCAGACCGCGGTCGAGACGTTCGAGACGCTGTCGCAGAGCCTGGCCGGCCTCAAGGTCGGGCTGGTG
CACGGGCGCCTGCCGTCCGCCGACAAGGCCGCGGTGATGAGCGCCTTCGCCGGCGGCGAGCTGCACGTGCTGGTGGCGAC
CACCGTGATCGAAGTGGGCGTCGACGTGCCCAACGCCTCGCTGATGGTGATCGAGCACGCCGAGCGCTTCGGGCTGGCGC
AGCTCCATCAGCTGCGCGGACGGGTCGGGCGCGGCACGGCCGAATCGGTCTGCATCCTGCTGTACCAGGCTCCCCTGTCG
CCGACGGCCAAGCAGCGCCTGCAGACCATGCGCGAGACCACCGACGGCTTCGAGATCGCGCGGCGCGACCTGGACATCCG
CGGCCCCGGCGAATTTCTCGGCGCGCGGCAATCGGGCGAGGCCATGCTGCGCTTTGCCGACCTGAACCACGATGCGTGGA
TGGTCGAGTTCGCCCAGGGCGCGGCCGAGCAGATGCTGGCGCGCTTTCCCGATGCGGTGGAGGCGCACCTCAAGCGCTGG
CTCGGCGAGCGCGAGCACTACCTGCGCGTCTAG

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)

RecG wedge domain (RecG_wedge)

(47-194)

DEAD/DEAH box helicase (DEAD)

(303-471)

Helicase conserved C-terminal domain (Helicase_C)

(515-625)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

57.994

94.247

0.547
  recG/mmsA Streptococcus pneumoniae R6

41.504

91.096

0.378
  recG/mmsA Streptococcus pneumoniae R36A

41.504

91.096

0.378