Detailed information NTG0382994

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HF908_RS03290
• Genome accession: NZ_CP051171
• Coordinates: 695558..696439 (-)
• Length: 293 a.a.
• NCBI ID: WP_275760905.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2279
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 690558..701439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF908_RS03260 (HF908_03300)	argJ	691268..692497 (+)	1230	WP_193027550.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
HF908_RS03265 (HF908_03305)	-	692513..693397 (+)	885	WP_193027551.1	ATP-binding protein	-
HF908_RS03270 (HF908_03310)	-	693375..693836 (+)	462	WP_193027552.1	NUDIX domain-containing protein	-
HF908_RS03275 (HF908_03315)	yacG	693829..694044 (-)	216	WP_011002736.1	DNA gyrase inhibitor YacG	-
HF908_RS03280 (HF908_03320)	zapD	694055..694813 (-)	759	WP_020747465.1	cell division protein ZapD	-
HF908_RS03285 (HF908_03325)	coaE	694931..695545 (-)	615	WP_193027553.1	dephospho-CoA kinase	-
HF908_RS03290 (HF908_03330)	pilD	695558..696439 (-)	882	WP_275760905.1	prepilin peptidase	Machinery gene
HF908_RS03295 (HF908_03335)	pilC	696442..697707 (-)	1266	WP_193027555.1	type II secretion system F family protein	Machinery gene
HF908_RS03300 (HF908_03340)	pilB	697752..699479 (-)	1728	WP_193027556.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HF908_RS03305 (HF908_03345)	-	699727..701004 (-)	1278	WP_193027557.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31654.59 Da
• Isoelectric Point: 7.6648

>NTDB_id=382994 HF908_RS03290 WP_275760905.1 695558..696439(-) (pilD) [Ralstonia pseudosolanacearum strain RUN2279]
MPGMFVIPTLAELPAWFVIGAGTLLGLLVGSFLNVVIHRLPRMIEREEANYIAELRNEPLPHSEPYNLVVPRSACPSCGH
QIKAVENIPVLSWLALRGRCSACKTPISWRYPAVELVTGVLTGACLWHFGPTWVAVASAALLWFLIAGSMIDADTQLLPD
AITQPLLWLGLLVNLFDMFARLPDAVIGATAGYLFLWSIYWAYKLLRGREGMGYGDFKLMGALGAWFGWQALPLLVLLSS
VVGLVFGVVRIARGATSESPFSFGPFIAGAGVISLLAGPQLVALMGLAPLLAR

Nucleotide

• Length: 882 bp

>NTDB_id=382994 HF908_RS03290 WP_275760905.1 695558..696439(-) (pilD) [Ralstonia pseudosolanacearum strain RUN2279]
ATGCCCGGAATGTTCGTCATTCCCACGCTGGCGGAACTGCCGGCGTGGTTCGTGATCGGCGCGGGGACGCTGCTGGGCTT
GTTGGTCGGCAGCTTCCTCAACGTGGTGATTCACCGCCTACCGCGCATGATCGAGCGCGAAGAGGCCAACTACATCGCCG
AGCTGCGCAACGAACCGCTGCCGCATTCCGAGCCGTACAACCTGGTGGTGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC
CAGATCAAGGCGGTCGAGAACATCCCGGTGCTGAGCTGGCTGGCGTTGCGCGGCCGCTGCAGCGCCTGCAAGACCCCCAT
CTCCTGGCGCTATCCCGCCGTGGAGCTGGTGACCGGCGTGCTGACCGGCGCCTGCCTGTGGCACTTCGGGCCGACCTGGG
TGGCGGTGGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGGCTCGATGATCGACGCCGACACGCAGCTCCTGCCCGAT
GCCATCACCCAGCCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCGACATGTTCGCCCGGCTGCCGGACGCGGTGAT
CGGCGCGACGGCGGGGTATCTGTTCCTGTGGAGCATCTACTGGGCCTATAAGCTCCTGCGCGGCCGCGAAGGCATGGGCT
ACGGCGACTTCAAGCTGATGGGCGCACTGGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGCTGTTGGTACTGCTGTCGTCG
GTGGTCGGTCTGGTGTTCGGGGTGGTGCGCATCGCGCGCGGCGCCACGAGCGAATCGCCGTTTTCGTTCGGCCCGTTCAT
CGCGGGTGCCGGCGTGATCTCACTGCTGGCCGGCCCGCAATTGGTGGCGCTGATGGGGCTCGCACCACTGCTGGCGCGGT
AA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.075	90.444	0.471
pilD	Vibrio campbellii strain DS40M4	49.817	93.174	0.464
pilD	Neisseria gonorrhoeae MS11	48.881	91.468	0.447
pilD	Acinetobacter nosocomialis M2	45.489	90.785	0.413
pilD	Acinetobacter baumannii D1279779	45.489	90.785	0.413