Detailed information NTG0382949

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: HF909_RS09190
• Genome accession: NZ_CP051169
• Coordinates: 1891482..1892756 (+)
• Length: 424 a.a.
• NCBI ID: WP_020748515.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2474
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1886482..1897756

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF909_RS09170 (HF909_09230)	-	1886604..1886798 (+)	195	WP_193025429.1	hypothetical protein	-
HF909_RS09175 (HF909_09235)	mnmC	1887041..1889050 (+)	2010	WP_193025431.1	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-
HF909_RS09180 (HF909_09240)	tig	1889284..1890633 (+)	1350	WP_193034501.1	trigger factor	-
HF909_RS09185 (HF909_09245)	clpP	1890663..1891316 (+)	654	WP_003267806.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
HF909_RS09190 (HF909_09250)	clpX	1891482..1892756 (+)	1275	WP_020748515.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
HF909_RS09195 (HF909_09255)	lon	1892927..1895347 (+)	2421	WP_193034502.1	endopeptidase La	-
HF909_RS09200 (HF909_09260)	-	1895522..1895794 (+)	273	WP_020748517.1	HU family DNA-binding protein	-
HF909_RS09215 (HF909_09275)	-	1896066..1896236 (-)	171	WP_158491008.1	hypothetical protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46360.55 Da
• Isoelectric Point: 5.5599

>NTDB_id=382949 HF909_RS09190 WP_020748515.1 1891482..1892756(+) (clpX) [Ralstonia pseudosolanacearum strain RUN2474]
MADKKGSTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAISEKEGGLAVKSDLPTPHEIRQSLDQY
VIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGED
VENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQ
VDTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDE
AALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIALKAIKRKTGARGLRSIVEHALMDVMYDLPNHKGVQKVVID
ESTIAGDGKPLLMYEEQPKVAGSN

Nucleotide

• Length: 1275 bp

>NTDB_id=382949 HF909_RS09190 WP_020748515.1 1891482..1892756(+) (clpX) [Ralstonia pseudosolanacearum strain RUN2474]
ATGGCGGACAAGAAAGGCTCGACTGGCGAAAAGCTGCTGTACTGCTCGTTCTGCGGCAAGAGCCAGCATGAAGTCAAGAA
ACTGATTGCCGGCCCCTCGGTCTTCATCTGCGATGAATGTATCGACCTGTGCAATGAAATCATCCGGGACGAGGCCGCGA
TCTCCGAGAAGGAGGGTGGGCTGGCGGTCAAATCCGACCTGCCGACCCCGCACGAGATTCGCCAGAGCCTGGATCAATAC
GTGATCGGTCAGGAGCAGGCCAAGAAGATCCTGGCGGTTGCGGTCTATAACCATTACAAGCGCTTGAAGCATCTCGGCAA
GAAGGATGACGTCGAGCTGTCCAAGAGCAACATCCTGCTCATCGGGCCGACCGGCTCGGGCAAGACGCTGCTGGCGCAGA
CGCTGGCTCGGCTGCTGAACGTGCCCTTCGTCATCGCCGACGCCACCACGCTGACCGAAGCCGGCTACGTGGGCGAGGAT
GTCGAGAACATCATCCAGAAGCTGCTGCAGAACTGCAATTACGAGGTCGACAAGGCACAGCGTGGCATTGTCTACATCGA
TGAGATCGACAAGATCTCTCGCAAGTCCGACAACCCGTCCATCACCCGAGACGTTTCCGGGGAAGGCGTGCAGCAGGCCC
TGCTGAAGCTGATCGAAGGGACGATGGCCTCGGTGCCGCCGCAGGGTGGGCGCAAGCATCCGAACCAGGATTTCCTCCAG
GTCGACACCACCAATATCCTGTTCATCTGCGGCGGTGCGTTCGATGGTCTCGAGAAGATCATTACGCAGCGCTCGGACAA
GTCCGGCATCGGCTTCGGCGCCGAGGTCAAGAGCAAGGAAGAGCGGGACGTCAACGAAGTGCTGCCGCAGGTGGAGCCGG
AAGACCTGATCAAGTTCGGCCTGATTCCCGAGCTGATCGGCCGCCTGCCCGTGGTGGCGACGCTGGCCAAGTTGGACGAG
GCCGCGTTGATGGAGATCCTGGTCGAGCCGAAGAATGCAATCGTCAAGCAGTATCAGAAACTGCTGGCCATGGAAGGGGT
GGAGCTGGAAATCCGTCCGAGCGCGCTGACGGCGATTGCCCTCAAGGCGATCAAGCGCAAGACGGGGGCGCGCGGATTGC
GTTCCATCGTCGAGCACGCGCTGATGGATGTGATGTACGACCTTCCCAACCACAAGGGTGTGCAGAAGGTGGTGATCGAC
GAGAGCACGATCGCCGGCGACGGCAAGCCCTTGCTGATGTACGAAGAGCAACCCAAGGTTGCAGGTTCCAACTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-49)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.688	95.991	0.583
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.342	95.047	0.517