Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FYC62_RS13330 Genome accession   NZ_CP043329
Coordinates   3041925..3043307 (+) Length   460 a.a.
NCBI ID   WP_149075289.1    Uniprot ID   A0A5C0VJ36
Organism   Pedobacter aquae strain CJ43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3036925..3048307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYC62_RS13300 (FYC62_13300) - 3037318..3037920 (+) 603 WP_149075286.1 superoxide dismutase -
  FYC62_RS13310 (FYC62_13310) - 3038142..3039149 (+) 1008 WP_240534734.1 zinc-binding dehydrogenase -
  FYC62_RS13315 (FYC62_13315) - 3039146..3039868 (-) 723 WP_149075287.1 LytTR family DNA-binding domain-containing protein -
  FYC62_RS13320 (FYC62_13320) - 3039871..3040896 (-) 1026 WP_039454019.1 sensor histidine kinase -
  FYC62_RS13325 (FYC62_13325) - 3041118..3041309 (+) 192 WP_149075288.1 hypothetical protein -
  FYC62_RS13330 (FYC62_13330) radA 3041925..3043307 (+) 1383 WP_149075289.1 DNA repair protein RadA Machinery gene
  FYC62_RS13335 (FYC62_13335) - 3043429..3043914 (+) 486 WP_149075290.1 DUF4920 domain-containing protein -
  FYC62_RS13340 (FYC62_13340) - 3044068..3044877 (-) 810 WP_149075291.1 hypothetical protein -
  FYC62_RS13345 (FYC62_13345) - 3044930..3046465 (-) 1536 WP_149075292.1 aldehyde dehydrogenase family protein -
  FYC62_RS13350 (FYC62_13350) - 3046736..3048142 (+) 1407 WP_039454797.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50711.63 Da        Isoelectric Point: 7.1548

>NTDB_id=382917 FYC62_RS13330 WP_149075289.1 3041925..3043307(+) (radA) [Pedobacter aquae strain CJ43]
MAKTKSSYFCQSCGYESAKWLGKCPSCQQWNTFVEEVVEKKSSGVPDWKSAGTASHSRVNKPSKVQEIVYTEEHRLVTPD
KELNRVLGGGIVGGSLVLIGGEPGIGKSTLMLQLALIVPKLKVLYVSGEESEQQIKLRAERILAKPVSDCYILTETSTQN
IFKQIELLEPNLVIIDSIQTLHSSHIESTPGSVSQVRECTAELLRFAKESSTPVFLIGHITKDGMIAGPKILEHMVDTVL
QFEGDRHHVYRILRAIKNRFGSASELGIYEMEGTGLREVSNPSEILLSQREEPLSGVTISATMEGMRPMLIETQALVSTS
PYGTPQRSATGFDTRRMNMLLAVLEKRCGFKLGAKDVFLNIAGGIRVEDPSIDLGLVAAIISSHEDIPVSYKICFAAEVG
LSGEIRAVTRIEQRIAEAQKLGFEQIFISKYNKKGLDISKFKIEIKTVAKVEEMFSLLFG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=382917 FYC62_RS13330 WP_149075289.1 3041925..3043307(+) (radA) [Pedobacter aquae strain CJ43]
TTGGCTAAAACTAAATCTTCTTATTTCTGTCAGAGTTGCGGATACGAATCTGCTAAATGGTTAGGTAAATGCCCTTCATG
CCAGCAATGGAACACTTTTGTTGAAGAAGTGGTAGAGAAAAAATCTAGCGGCGTACCCGATTGGAAAAGTGCTGGAACTG
CATCACACAGCAGGGTAAACAAGCCATCAAAAGTTCAAGAAATTGTATATACAGAAGAACACCGTTTGGTTACACCAGAT
AAAGAACTAAACCGTGTGCTTGGTGGTGGTATTGTTGGTGGTTCATTGGTATTGATAGGTGGCGAGCCGGGCATAGGTAA
ATCTACCTTGATGTTGCAATTGGCCCTTATTGTGCCTAAACTAAAAGTACTTTATGTATCTGGCGAGGAGAGCGAGCAGC
AAATCAAGCTCAGGGCAGAGCGTATATTAGCTAAACCGGTGTCAGACTGTTATATCCTCACAGAAACATCAACACAAAAT
ATATTTAAGCAAATAGAGCTTCTTGAGCCTAATTTGGTGATTATCGATTCTATTCAAACCTTACATTCATCACATATAGA
ATCTACTCCGGGAAGTGTTTCGCAGGTGAGAGAATGTACGGCAGAACTTTTACGTTTTGCTAAAGAATCATCAACACCTG
TATTTTTAATTGGGCATATTACCAAAGATGGAATGATAGCCGGACCAAAAATATTAGAACACATGGTAGATACCGTTCTG
CAGTTTGAAGGAGATAGACATCACGTTTACAGAATATTAAGAGCTATTAAAAACAGATTTGGCTCGGCATCAGAACTAGG
TATTTATGAAATGGAAGGAACAGGGCTTAGAGAAGTTTCTAATCCTTCAGAAATACTGTTATCGCAAAGGGAAGAGCCTT
TAAGTGGCGTTACCATATCGGCCACTATGGAAGGCATGCGCCCTATGCTGATAGAAACCCAGGCATTGGTAAGTACATCG
CCTTACGGTACACCACAACGTTCCGCAACAGGTTTTGATACCCGCCGTATGAACATGCTTTTAGCCGTTTTAGAGAAAAG
ATGCGGATTTAAGTTAGGTGCAAAAGATGTTTTCTTGAATATAGCGGGCGGTATAAGGGTAGAAGATCCTAGTATAGATT
TAGGCTTGGTAGCAGCAATAATTTCTTCGCATGAGGATATTCCGGTTTCTTATAAAATTTGTTTTGCTGCCGAGGTAGGT
TTATCTGGAGAGATTAGAGCCGTTACCCGGATAGAGCAACGTATTGCAGAAGCCCAGAAGCTGGGTTTCGAGCAAATTTT
CATCTCTAAGTACAACAAAAAAGGTCTAGATATCAGTAAGTTTAAAATCGAGATTAAAACCGTAGCCAAAGTAGAAGAAA
TGTTTAGCTTGTTGTTTGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-225)

Subunit ChlI of Mg-chelatase (ChlI)

(346-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0VJ36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.7

100

0.53
  radA Streptococcus pneumoniae Rx1

49.565

100

0.496
  radA Streptococcus pneumoniae D39

49.565

100

0.496
  radA Streptococcus pneumoniae R6

49.565

100

0.496
  radA Streptococcus pneumoniae TIGR4

49.565

100

0.496
  radA Streptococcus mitis NCTC 12261

49.565

100

0.496
  radA Streptococcus mitis SK321

49.348

100

0.493

Multiple sequence alignment