Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HF584_RS06930 Genome accession   NZ_CP051165
Coordinates   1430962..1431558 (-) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain NGA84b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1425962..1436558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF584_RS06925 (HF584_01935) - 1430658..1430754 (-) 97 Protein_1360 hypothetical protein -
  HF584_RS06930 (HF584_01930) recR 1430962..1431558 (-) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  HF584_RS06935 (HF584_01925) - 1431565..1431882 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  HF584_RS06940 (HF584_01920) dnaX 1431972..1433669 (-) 1698 WP_054190391.1 DNA polymerase III subunit gamma/tau -
  HF584_RS06945 (HF584_01915) - 1433738..1434262 (-) 525 WP_054190392.1 N-acetyltransferase -
  HF584_RS06950 (HF584_01910) - 1434401..1434502 (-) 102 WP_054190393.1 hypothetical protein -
  HF584_RS06960 (HF584_01900) treR 1434903..1435631 (-) 729 WP_054190394.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=382894 HF584_RS06930 WP_000559156.1 1430962..1431558(-) (recR) [Staphylococcus aureus strain NGA84b]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=382894 HF584_RS06930 WP_000559156.1 1430962..1431558(-) (recR) [Staphylococcus aureus strain NGA84b]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAATTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGCTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATATAAAGGTTTATATCATGTATT
ACATGGGTCTATTTCTCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGTGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGTTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475