Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FXF61_RS12675 Genome accession   NZ_CP043320
Coordinates   2761891..2762298 (-) Length   135 a.a.
NCBI ID   WP_151185594.1    Uniprot ID   A0A5J6QBU9
Organism   Pseudomonas sp. C27(2019)     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2759907..2761160 2761891..2762298 flank 731


Gene organization within MGE regions


Location: 2759907..2762298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXF61_RS12665 (FXF61_12665) - 2759907..2761160 (+) 1254 WP_151184202.1 IS256 family transposase -
  FXF61_RS15155 - 2761190..2761423 (-) 234 Protein_2508 chemotaxis protein CheW -
  FXF61_RS12670 (FXF61_12670) pilH 2761467..2761832 (-) 366 WP_151185593.1 twitching motility response regulator PilH -
  FXF61_RS12675 (FXF61_12675) pilG 2761891..2762298 (-) 408 WP_151185594.1 twitching motility response regulator PilG Regulator

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14730.13 Da        Isoelectric Point: 7.2439

>NTDB_id=382872 FXF61_RS12675 WP_151185594.1 2761891..2762298(-) (pilG) [Pseudomonas sp. C27(2019)]
MEHKSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADTHPDIIFVDIMMPRLDGYQTCALIKNNSAFR
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELIGAIKTHVPAFVAADTAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=382872 FXF61_RS12675 WP_151185594.1 2761891..2762298(-) (pilG) [Pseudomonas sp. C27(2019)]
ATGGAACACAAATCAGAAGGCTTAAAAGTGATGGTGATTGACGACTCAAAAACGATTCGTCGCACTGCCGAAACCTTGCT
TAAAAAAGTAGGCTGTGAAGTGATCACAGCGGTAGATGGTTTTGACGCGCTGGCAAAAATTGCAGATACACATCCGGATA
TTATTTTTGTCGATATTATGATGCCGCGCTTAGATGGTTATCAAACTTGTGCGTTGATTAAGAACAATAGTGCTTTTCGA
TCAACGCCAGTGATTATGTTGTCCTCAAAAGATGGCTTATTTGATAAAGCCAAAGGCCGCATTGTTGGTTCGGATCAGTA
TTTAACGAAGCCGTTCAGTAAAGAAGAACTTATTGGTGCAATTAAAACGCATGTCCCTGCCTTTGTTGCAGCGGACACTG
CATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6QBU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.591

94.074

0.711
  vicR Streptococcus mutans UA159

40.602

98.519

0.4

Multiple sequence alignment