Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FXF61_RS03500 Genome accession   NZ_CP043320
Coordinates   749060..749692 (+) Length   210 a.a.
NCBI ID   WP_151183960.1    Uniprot ID   A0A5J6Q7I8
Organism   Pseudomonas sp. C27(2019)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 744060..754692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXF61_RS03480 (FXF61_03480) - 745225..745653 (-) 429 WP_178087256.1 DUF4395 family protein -
  FXF61_RS03490 (FXF61_03490) - 746080..746610 (-) 531 WP_151183959.1 DUF2062 domain-containing protein -
  FXF61_RS03495 (FXF61_03495) comA 746749..748983 (+) 2235 WP_178087257.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FXF61_RS03500 (FXF61_03500) exbB 749060..749692 (+) 633 WP_151183960.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FXF61_RS03505 (FXF61_03505) - 749689..750117 (+) 429 WP_151183961.1 biopolymer transporter ExbD -
  FXF61_RS03510 (FXF61_03510) lpxK 750114..751118 (+) 1005 WP_151183962.1 tetraacyldisaccharide 4'-kinase -
  FXF61_RS03515 (FXF61_03515) - 751129..751311 (+) 183 WP_151183963.1 Trm112 family protein -
  FXF61_RS03520 (FXF61_03520) kdsB 751315..752088 (+) 774 WP_151183964.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FXF61_RS03525 (FXF61_03525) - 752113..752577 (+) 465 WP_151183965.1 low molecular weight protein-tyrosine-phosphatase -
  FXF61_RS03530 (FXF61_03530) murB 752574..753599 (+) 1026 WP_151183966.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22937.06 Da        Isoelectric Point: 8.0301

>NTDB_id=382856 FXF61_RS03500 WP_151183960.1 749060..749692(+) (exbB) [Pseudomonas sp. C27(2019)]
MWELIKSGGWIMLPIVVCSIIAVAIVAERLWTLRPSRVSPPHLLGQVWRWVQDKKMDSNKLKELRAGSALGQILAAGLAN
SRYGREMMKESIQEAGSKVVNELERYLTPLGTIAAITPLLGLLGTVLGMIEIFGAFMGSGMANAPQLASGIAKALVTTAA
GLFVAIPAVFFHRFLQRRVEELVVNMEQEAIKLVEVVQGDREVELSEDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=382856 FXF61_RS03500 WP_151183960.1 749060..749692(+) (exbB) [Pseudomonas sp. C27(2019)]
GTGTGGGAACTGATCAAATCGGGTGGCTGGATTATGCTGCCTATTGTGGTGTGTTCAATTATTGCAGTTGCCATTGTTGC
TGAGCGCTTATGGACATTGCGCCCATCACGCGTGAGTCCGCCACATTTACTGGGTCAAGTGTGGCGCTGGGTGCAAGATA
AGAAAATGGATAGCAATAAGTTGAAGGAATTGCGCGCAGGTTCTGCGTTGGGGCAGATTCTTGCTGCCGGTTTAGCCAAT
TCACGCTATGGCCGTGAAATGATGAAAGAAAGCATTCAAGAAGCCGGCTCTAAAGTAGTCAATGAGTTGGAGCGTTATTT
GACGCCGCTCGGTACTATCGCTGCGATCACGCCGCTACTGGGTCTGCTGGGTACGGTGTTGGGTATGATTGAGATCTTTG
GTGCTTTTATGGGCTCAGGTATGGCTAATGCACCGCAATTGGCTAGTGGTATTGCTAAAGCATTGGTAACCACGGCAGCG
GGCTTGTTTGTTGCAATTCCCGCAGTATTTTTCCACCGTTTTTTACAGCGCCGGGTGGAAGAGCTGGTGGTTAATATGGA
GCAAGAGGCAATTAAATTGGTTGAAGTGGTGCAGGGTGATCGTGAGGTTGAGCTGAGTGAGGATAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6Q7I8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

76.19

100

0.762

Multiple sequence alignment