Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FXF61_RS03495 Genome accession   NZ_CP043320
Coordinates   746749..748983 (+) Length   744 a.a.
NCBI ID   WP_178087257.1    Uniprot ID   -
Organism   Pseudomonas sp. C27(2019)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741749..753983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXF61_RS03470 (FXF61_03470) - 742356..744092 (-) 1737 WP_151183957.1 alpha/beta hydrolase -
  FXF61_RS03480 (FXF61_03480) - 745225..745653 (-) 429 WP_178087256.1 DUF4395 family protein -
  FXF61_RS03490 (FXF61_03490) - 746080..746610 (-) 531 WP_151183959.1 DUF2062 domain-containing protein -
  FXF61_RS03495 (FXF61_03495) comA 746749..748983 (+) 2235 WP_178087257.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FXF61_RS03500 (FXF61_03500) exbB 749060..749692 (+) 633 WP_151183960.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FXF61_RS03505 (FXF61_03505) - 749689..750117 (+) 429 WP_151183961.1 biopolymer transporter ExbD -
  FXF61_RS03510 (FXF61_03510) lpxK 750114..751118 (+) 1005 WP_151183962.1 tetraacyldisaccharide 4'-kinase -
  FXF61_RS03515 (FXF61_03515) - 751129..751311 (+) 183 WP_151183963.1 Trm112 family protein -
  FXF61_RS03520 (FXF61_03520) kdsB 751315..752088 (+) 774 WP_151183964.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FXF61_RS03525 (FXF61_03525) - 752113..752577 (+) 465 WP_151183965.1 low molecular weight protein-tyrosine-phosphatase -
  FXF61_RS03530 (FXF61_03530) murB 752574..753599 (+) 1026 WP_151183966.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 82518.72 Da        Isoelectric Point: 9.6206

>NTDB_id=382855 FXF61_RS03495 WP_178087257.1 746749..748983(+) (comA) [Pseudomonas sp. C27(2019)]
MRLSILAFIVGMLSLRWLPSLPSTLLLGFAFVVALLLFYRRLYPLAFVLLGLCWACVSAQWAVDDQLAPDLDGRTLWVEG
VVEGLPEWSVLAGQATTVRFQLTDAQSRRAHLPKRMRLSWRAPPQPVKAGERWRLAVRLKRPDGLLNPHGFDYQAWLFAK
RLGATGSIKAGQRLAPGQGLHHWREQLRERLQRYAPQQVQAVMAALVLGDSSGLQPEQWQTLQTTGTVHLMVISGQHISL
IAALAYAAVLWLMRLGCWPQRVPWLPVACLLSMSAALAYGAFAGFAVPVQRACIMVMVALLWRWRFQSLSVWTAYLAALC
LVLVHEPLVVLQAGFWLSFTAVGALILAFSARLGAWRWWHMLLRTQWVAAIGLAPFLLALNLPVSLMGPVANIFAVPWLS
LLALPLTLLGTLLLPWPNLAVWLLSVAGWCLDAMFFVLTWFAQGWPAWQGAAATTLGLLLAVLGVLCFLLPRPLLPLTAG
VLLSVPLMQPRPEVMADGQAQVWILDVGQGQAVWIKTAQHSLLYDAGPFISGFNSGERIVVPVLRGFAQTHLDVLLLSHA
DADHAGGAQAVMDAIAVTQVVSGESSEHPAGFSAQTCSEQQWQWDGVWFWRWQWPHAKDSNQQSCVLLISAQGERLLLTG
DLDAAGEAALLTSWPWLKADWLMVGHHGSRTSTSQRFVQAVAPQYAIVSRGKHNSYGHPHPHVLATLQRQQVRIYDTAHD
KAVRIDLGTYAEPWTMAKQLRFWR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=382855 FXF61_RS03495 WP_178087257.1 746749..748983(+) (comA) [Pseudomonas sp. C27(2019)]
GTGCGTTTATCAATACTGGCGTTTATTGTTGGTATGCTCAGTTTGCGCTGGCTGCCTAGTTTACCGAGTACGTTGTTACT
GGGCTTTGCTTTCGTTGTTGCTCTGCTATTGTTCTATCGGCGCTTGTATCCCTTAGCTTTTGTGTTGCTTGGTTTGTGTT
GGGCATGCGTGAGCGCGCAATGGGCTGTGGATGATCAGCTTGCGCCTGACTTGGACGGTCGCACCCTATGGGTCGAAGGC
GTTGTAGAAGGCTTGCCTGAGTGGTCTGTGCTTGCTGGGCAAGCGACAACGGTGCGTTTCCAATTAACTGATGCGCAGTC
ACGTCGCGCGCACTTGCCTAAGCGAATGCGTTTGTCTTGGCGTGCACCGCCACAGCCGGTTAAAGCGGGTGAGCGCTGGC
GCTTGGCGGTGCGTCTTAAGCGGCCCGATGGCTTACTTAATCCCCACGGTTTTGATTACCAAGCGTGGCTGTTTGCTAAA
CGTCTTGGTGCCACTGGTTCCATTAAAGCAGGTCAGCGTTTAGCGCCAGGACAGGGCTTGCATCATTGGCGTGAGCAGCT
CAGGGAGCGTTTGCAGCGCTATGCGCCACAGCAGGTTCAGGCTGTGATGGCTGCCTTGGTGCTGGGTGACAGTTCTGGCT
TGCAACCTGAACAATGGCAAACGCTACAGACCACGGGCACCGTGCACTTAATGGTGATTTCTGGTCAGCACATCAGTTTG
ATTGCCGCGCTGGCTTATGCAGCTGTGCTTTGGCTGATGCGCTTAGGTTGCTGGCCGCAACGCGTGCCTTGGCTGCCGGT
AGCCTGTCTATTGTCAATGTCAGCAGCCTTGGCCTATGGCGCGTTTGCAGGCTTTGCCGTACCAGTGCAACGCGCCTGTA
TTATGGTGATGGTGGCGTTGTTATGGCGTTGGCGCTTTCAATCGTTAAGCGTGTGGACAGCCTATTTGGCTGCATTGTGT
TTGGTTCTAGTGCATGAGCCTTTGGTGGTTTTGCAGGCTGGGTTCTGGTTGTCGTTCACTGCGGTTGGTGCATTGATTCT
TGCATTTTCTGCACGTTTAGGGGCGTGGCGCTGGTGGCATATGCTGCTGCGCACGCAGTGGGTAGCCGCCATTGGTTTAG
CACCTTTTTTGTTGGCTTTAAATTTGCCAGTCAGCTTGATGGGGCCGGTGGCTAATATTTTTGCAGTGCCTTGGTTAAGT
TTATTGGCCTTGCCATTGACGCTGCTGGGCACTTTATTATTGCCGTGGCCGAATTTAGCGGTTTGGCTGTTGAGTGTTGC
AGGCTGGTGTTTGGATGCGATGTTTTTTGTGCTGACTTGGTTTGCACAGGGCTGGCCCGCTTGGCAGGGTGCGGCGGCGA
CCACGCTAGGGCTGCTGCTCGCGGTGCTGGGCGTTCTTTGTTTTTTATTACCACGGCCACTATTGCCTCTGACTGCAGGC
GTATTGCTAAGCGTGCCTTTAATGCAGCCCAGGCCAGAGGTGATGGCTGATGGGCAAGCGCAAGTCTGGATTTTGGATGT
AGGGCAAGGGCAAGCGGTGTGGATTAAAACTGCACAACACAGCCTGTTATACGATGCAGGGCCTTTCATCTCTGGATTTA
ATAGCGGTGAGCGTATTGTTGTGCCGGTGCTGCGCGGTTTTGCGCAAACGCATTTGGATGTGCTGCTGTTATCGCATGCT
GACGCAGATCATGCTGGCGGCGCGCAAGCTGTTATGGATGCCATAGCAGTAACCCAAGTAGTGAGTGGTGAGTCCAGCGA
GCATCCAGCTGGTTTTTCAGCACAGACTTGCAGTGAGCAGCAGTGGCAATGGGATGGCGTGTGGTTTTGGCGTTGGCAGT
GGCCACATGCAAAAGACAGTAACCAGCAGTCCTGTGTACTGCTGATTTCTGCGCAAGGTGAGCGTTTACTGCTAACCGGT
GATTTAGATGCAGCCGGTGAGGCGGCTTTATTGACTAGCTGGCCATGGTTAAAAGCGGACTGGTTGATGGTTGGTCATCA
TGGCAGTCGTACCTCAACCTCGCAGCGTTTTGTACAGGCTGTTGCGCCACAGTATGCCATTGTTTCCCGTGGTAAACACA
ACAGTTACGGGCATCCACATCCGCACGTCTTAGCAACTTTACAGCGTCAGCAGGTGCGTATTTACGATACGGCACATGAT
AAAGCTGTGCGGATTGATTTAGGCACTTATGCTGAACCATGGACGATGGCGAAGCAATTGCGTTTTTGGCGCTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(206-469)

Domain of unknown function (DUF4131) (DUF4131)

(17-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(506-689)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

50.207

97.177

0.488

Multiple sequence alignment