Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   FYN22_RS15415 Genome accession   NZ_CP043307
Coordinates   3179465..3180619 (+) Length   384 a.a.
NCBI ID   WP_148826926.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3174465..3185619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS15400 (FYN22_15400) - 3176145..3178211 (-) 2067 WP_148826924.1 TonB-dependent copper receptor -
  FYN22_RS15405 (FYN22_15405) - 3178282..3178719 (-) 438 WP_148826925.1 DUF2946 family protein -
  FYN22_RS15410 (FYN22_15410) def 3178811..3179344 (-) 534 WP_004684452.1 peptide deformylase -
  FYN22_RS15415 (FYN22_15415) tsaP 3179465..3180619 (+) 1155 WP_148826926.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FYN22_RS15420 (FYN22_15420) dprA 3180642..3181775 (+) 1134 WP_148826927.1 DNA-processing protein DprA Machinery gene
  FYN22_RS15425 (FYN22_15425) - 3181821..3182390 (+) 570 WP_148826928.1 L-threonylcarbamoyladenylate synthase -
  FYN22_RS15430 (FYN22_15430) - 3182790..3183710 (-) 921 WP_087013942.1 DMT family transporter -
  FYN22_RS15435 (FYN22_15435) - 3184046..3184600 (+) 555 WP_148826929.1 hypothetical protein -
  FYN22_RS15440 (FYN22_15440) - 3184725..3185270 (+) 546 WP_004984048.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42357.28 Da        Isoelectric Point: 7.1063

>NTDB_id=382785 FYN22_RS15415 WP_148826926.1 3179465..3180619(+) (tsaP) [Acinetobacter johnsonii strain Acsw19]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKSWLE
HSTILSEESLEDTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVASAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTDGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=382785 FYN22_RS15415 WP_148826926.1 3179465..3180619(+) (tsaP) [Acinetobacter johnsonii strain Acsw19]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCTGGCGTCATTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGCTGG
CCTGAAATTTGGGCCAGCAATAGACATGTCAAAAATCCGCATTGGATTTTTCCAGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGACGAAGGCGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAGCTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGATACACCGTATATCGTTGGTGCTGCCGATCAGCGTGTGATTGCAGG
CAAAGGCCAAACTGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGCTTCAGCCATTGCCATTCGT
GGTGAAAATGATATGTCCACCTTAGAAATCACAGACTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTTTACCCAACACATGCACAAGATGTGACTGATGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTATTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTCTTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAACTTTCTCCCTCTGTCGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.494

100

0.667

Multiple sequence alignment