Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FYN22_RS15165 Genome accession   NZ_CP043307
Coordinates   3122770..3124338 (+) Length   522 a.a.
NCBI ID   WP_148826905.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3117770..3129338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS15145 (FYN22_15145) - 3118247..3119551 (+) 1305 WP_010325700.1 homoserine dehydrogenase -
  FYN22_RS15150 (FYN22_15150) thrC 3119617..3120756 (+) 1140 WP_004692833.1 threonine synthase -
  FYN22_RS15155 (FYN22_15155) - 3120842..3121897 (-) 1056 WP_005400997.1 serine hydrolase -
  FYN22_RS15160 (FYN22_15160) - 3122113..3122748 (+) 636 WP_010325697.1 response regulator -
  FYN22_RS15165 (FYN22_15165) pilS 3122770..3124338 (+) 1569 WP_148826905.1 sensor histidine kinase Regulator
  FYN22_RS15170 (FYN22_15170) pilR 3124411..3125775 (+) 1365 WP_410487276.1 sigma-54-dependent transcriptional regulator Regulator
  FYN22_RS15175 (FYN22_15175) - 3125780..3126889 (-) 1110 WP_410487277.1 S41 family peptidase -
  FYN22_RS15180 (FYN22_15180) gpmI 3126974..3128521 (-) 1548 WP_062033296.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59639.20 Da        Isoelectric Point: 6.5958

>NTDB_id=382782 FYN22_RS15165 WP_148826905.1 3122770..3124338(+) (pilS) [Acinetobacter johnsonii strain Acsw19]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKNVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACTLLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIKIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQTNDPQQELLQTMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRVYSYKNLVHIEVCDFGEGVATQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=382782 FYN22_RS15165 WP_148826905.1 3122770..3124338(+) (pilS) [Acinetobacter johnsonii strain Acsw19]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTACTGACTTATGAGCAGCTATTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGAATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCATTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACAGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTACATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TACCCCTTATATAAGGCGCAACCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAAAATGGGGAAAAATTCCAATT
TACATCGCAACTGAGTCGCTTTCAGATTCAGATCAAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCCGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACACAAGCTAATGAACTAATGCAAACCAATGATCCACAACAAGAACT
GTTGCAGACCATGATTGCCAAACAAGCCTCAAGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTAATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAACGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCAAATTCGTGTCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAACCGCCCTGTTTCAACCGTTTTTTAGTACCTCCATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.885

99.808

0.598

Multiple sequence alignment