Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FYN22_RS01685 Genome accession   NZ_CP043307
Coordinates   367903..368550 (-) Length   215 a.a.
NCBI ID   WP_148825429.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362903..373550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS01650 (FYN22_01650) mlaE 363246..364025 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  FYN22_RS01655 (FYN22_01655) - 364025..364699 (+) 675 WP_005401297.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FYN22_RS01660 (FYN22_01660) - 364720..365355 (+) 636 WP_004691364.1 phospholipid-binding protein MlaC -
  FYN22_RS01665 (FYN22_01665) - 365367..365654 (+) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  FYN22_RS01670 (FYN22_01670) - 365736..366749 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  FYN22_RS01675 (FYN22_01675) - 366902..367501 (+) 600 WP_004691359.1 TIGR00730 family Rossman fold protein -
  FYN22_RS01680 (FYN22_01680) - 367498..367902 (+) 405 WP_148825428.1 NUDIX hydrolase -
  FYN22_RS01685 (FYN22_01685) comF 367903..368550 (-) 648 WP_148825429.1 ComF family protein Machinery gene
  FYN22_RS01690 (FYN22_01690) recG 368537..370582 (-) 2046 WP_148825430.1 ATP-dependent DNA helicase RecG -
  FYN22_RS01695 (FYN22_01695) - 370616..371431 (+) 816 WP_148825431.1 NAD-dependent epimerase/dehydratase family protein -
  FYN22_RS01700 (FYN22_01700) - 371624..371858 (+) 235 Protein_328 DUF6500 family protein -
  FYN22_RS01705 (FYN22_01705) - 372043..372420 (+) 378 WP_029575123.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24866.08 Da        Isoelectric Point: 8.9561

>NTDB_id=382755 FYN22_RS01685 WP_148825429.1 367903..368550(-) (comF) [Acinetobacter johnsonii strain Acsw19]
MPMFSHLLHNAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIQQQ
FKIDPQQRQYAKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAVCIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=382755 FYN22_RS01685 WP_148825429.1 367903..368550(-) (comF) [Acinetobacter johnsonii strain Acsw19]
ATGCCTATGTTTAGTCATTTACTGCACAACGCCAAACAGTTGCTACACAAAGCACAGCCTTGTCAGTTGTGTGGTATTGT
ACGCGCAGATCTGCATTCGGTCTGTTTGGACTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTGGCTGGACAGTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTGCAAGCAATTGTTCCGATGCCGATTTCAAC
CCAACGTTTAGCGGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAACAGTTAAATGTTCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTAGAACGCTTAGATCAAATTCAGCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTATGCAAAACTCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCCATTCAGGCCCTGACTTTACAACTTGAACAATTAGGTTGTCATAAAGTCAGCGCCGTGTGTATTGCCTATGCGC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

55.924

98.14

0.549
  comF Acinetobacter baumannii D1279779

55.924

98.14

0.549

Multiple sequence alignment