Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   GRB95_RS01890 Genome accession   NZ_CP051004
Coordinates   334033..334674 (+) Length   213 a.a.
NCBI ID   WP_000357891.1    Uniprot ID   -
Organism   Streptococcus agalactiae 515     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 329033..339674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB95_RS01870 (GRB95_01870) - 329478..330215 (+) 738 WP_000406231.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  GRB95_RS01875 (GRB95_01875) pknB 330215..332170 (+) 1956 WP_000614570.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  GRB95_RS01880 (GRB95_01880) liaF 332329..333024 (+) 696 WP_000714456.1 cell wall-active antibiotics response protein LiaF -
  GRB95_RS01885 (GRB95_01885) - 333021..334040 (+) 1020 WP_000716170.1 sensor histidine kinase -
  GRB95_RS01890 (GRB95_01890) vraR 334033..334674 (+) 642 WP_000357891.1 response regulator transcription factor Regulator
  GRB95_RS01895 (GRB95_01895) - 334716..336116 (+) 1401 WP_000339135.1 Cof-type HAD-IIB family hydrolase -
  GRB95_RS01900 (GRB95_01900) - 336118..336474 (+) 357 WP_000689608.1 S1 RNA-binding domain-containing protein -
  GRB95_RS01905 (GRB95_01905) - 336521..337297 (-) 777 WP_000180537.1 glycyl-radical enzyme activating protein -
  GRB95_RS01910 (GRB95_01910) - 337418..338173 (+) 756 WP_001080746.1 DeoR family transcriptional regulator -
  GRB95_RS01915 (GRB95_01915) - 338292..339275 (+) 984 WP_000764455.1 sugar-binding transcriptional regulator -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23634.35 Da        Isoelectric Point: 5.0159

>NTDB_id=382572 GRB95_RS01890 WP_000357891.1 334033..334674(+) (vraR) [Streptococcus agalactiae 515]
MDKIKIVLVDDHEMVRLGLKSFLNLQADVEVIGEASNGLEGIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAI
LVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHDKCPALHEGLTARERDILNLLA
KGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLVPQDDE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=382572 GRB95_RS01890 WP_000357891.1 334033..334674(+) (vraR) [Streptococcus agalactiae 515]
ATGGATAAAATAAAAATTGTACTTGTTGATGACCATGAGATGGTTCGTCTCGGTTTAAAAAGTTTTTTAAACTTACAAGC
TGATGTTGAAGTAATAGGTGAGGCCTCAAATGGTTTAGAAGGCATAAAAAAAGCACTGGAGTTACGTCCAGACGTTGTTG
TTATGGACTTAGTAATGCCTGAAATGGACGGTGTAGAAGCAACCTTAGCATTATTGAAGGATTGGCCAGAAGCTGCTATT
TTAGTCTTAACATCTTACTTGGACAATGAAAAAATTTACCCTGTTATTGAAGCAGGTGCCAAAGGCTATATGTTAAAGAC
CTCAAGTGCAGCAGAGATTCTTAATGCCATTCGTAAAGTTGCAAGGGGAGAACAAGCTATTGAAAATGAAGTAGATAAGA
AAATTAAGGCTCATGATAAATGTCCAGCTTTACATGAGGGCTTAACAGCAAGGGAACGTGATATCCTTAATTTATTAGCC
AAAGGTTATGACAATCAAAGGATTGCTGATGAATTATTTATCTCGTTAAAGACTGTTAAAACTCATGTTTCTAATATTTT
GGGAAAACTAAATGTAGCAGATCGAACTCAAGCGGTTGTCTATGCTTTCCAACACCATTTGGTACCACAAGATGATGAAT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

54.369

96.714

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

37.168

100

0.394

Multiple sequence alignment