Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HEP85_RS22660 Genome accession   NZ_CP050975
Coordinates   5185810..5187219 (-) Length   469 a.a.
NCBI ID   WP_168529368.1    Uniprot ID   A0ABW3XSH1
Organism   Streptomyces sp. RPA4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5180810..5192219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP85_RS22640 (HEP85_22880) - 5181436..5181987 (-) 552 WP_168529360.1 SigE family RNA polymerase sigma factor -
  HEP85_RS22645 (HEP85_22885) - 5182256..5183176 (-) 921 WP_168529362.1 A/G-specific adenine glycosylase -
  HEP85_RS22650 (HEP85_22890) - 5183664..5184473 (+) 810 WP_168529364.1 hypothetical protein -
  HEP85_RS22655 (HEP85_22895) disA 5184617..5185741 (-) 1125 WP_168529366.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HEP85_RS22660 (HEP85_22900) radA/sms 5185810..5187219 (-) 1410 WP_168529368.1 DNA repair protein RadA Machinery gene
  HEP85_RS22665 (HEP85_22905) - 5187493..5189252 (+) 1760 Protein_4464 hypothetical protein -
  HEP85_RS22670 (HEP85_22910) - 5189256..5190116 (-) 861 WP_168529370.1 hypothetical protein -
  HEP85_RS22675 (HEP85_22915) - 5190188..5191119 (+) 932 Protein_4466 Ppx/GppA family phosphatase -
  HEP85_RS22680 (HEP85_22920) - 5191320..5192144 (+) 825 WP_168529374.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49829.99 Da        Isoelectric Point: 8.0026

>NTDB_id=382346 HEP85_RS22660 WP_168529368.1 5185810..5187219(-) (radA/sms) [Streptomyces sp. RPA4-2]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGRTPPGMKVLEVADMGEALRVLPRSRRREAPREDEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=382346 HEP85_RS22660 WP_168529368.1 5185810..5187219(-) (radA/sms) [Streptomyces sp. RPA4-2]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGATGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCACCCGCGGTCCGGACCACGACGCCCGGCC
GTGTCACCACCTCCGCGGTGCCCATCGGCCAGGTGGACGGCCGCCAGGCCACCGCGCGCAGCACCGGCGTACCCGAGCTG
GACCGCGTCCTGGGCGGCGGTCTGGTGCCCGGCGCGGTCGTCCTGCTCGCCGGCGAGCCCGGCGTCGGGAAGTCCACCCT
TCTCCTGGACGTGGCGGCGAAGGCGGCGAGCGACGAGCACCGCACGCTGTATGTGACGGGTGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGGGCCGACCGCATCAAGGCCATCGACGACCACCTCTATCTGGCCGCGGAGACCGACCTGGCCGCCGTCCTC
GGCCACCTGGACGCCGTGAAGCCGTCACTCCTCATCCTCGACTCGGTCCAGACCGTCGCCTCCCCGGAGATCGACGGCGC
CCCGGGCGGCATGGCCCAGGTCCGTGAGGTCGCCGGGGCACTCATCCGCGCCTCCAAGGAGCGCGGCATGTCGACCCTCC
TCGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCCCGCCTGCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCCCGCCTCAGGCTGGTCCGAGGCGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGACCGACCCCTCCGGTCTCTTCCTCACCCGGCGCGCCGAGCCGGTCCCGG
GCACCTGTCTGACCGTGACCCTGGAAGGCCGCCGGCCCCTGGTCGCGGAGGTGCAGGCCCTCACGGTGGACTCGCAGATC
CCCTCCCCCCGCCGGACGACCTCCGGTCTGGAGACCTCCCGCGTCTCCATGATGCTGGCCGTCCTGGAGCAGCGGGGCCG
GATCACCGCCCTCGGAAAACGTGACATCTACTCGGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CGATCGCCCTCGCGCTCGCGTCCGCGGCGAGTGACACTCCTCTCCCCAAGAACCTCGTCGCGATCGGCGAAGTGGGCCTC
GCCGGGGAGGTCAGACGGGTCACGGGGGTGCAGCGGCGACTGGCCGAAGCCCACCGACTGGGCTTCACCCACGCCCTCGT
TCCGAGCGATCCGGGCAGGACGCCACCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGAGGCGCTGCGGGTCCTTC
CGCGCTCCCGTCGTCGAGAGGCCCCACGGGAGGACGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus mitis NCTC 12261

43.556

95.949

0.418
  radA Streptococcus mitis SK321

43.556

95.949

0.418
  radA Streptococcus pneumoniae TIGR4

43.333

95.949

0.416
  radA Streptococcus pneumoniae Rx1

43.333

95.949

0.416
  radA Streptococcus pneumoniae D39

43.333

95.949

0.416
  radA Streptococcus pneumoniae R6

43.333

95.949

0.416