Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HEP85_RS21980 Genome accession   NZ_CP050975
Coordinates   5027243..5027842 (+) Length   199 a.a.
NCBI ID   WP_168529246.1    Uniprot ID   A0ABW3X5Y0
Organism   Streptomyces sp. RPA4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5022243..5032842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP85_RS21965 (HEP85_22195) - 5024174..5025727 (+) 1554 WP_168529243.1 PstS family phosphate ABC transporter substrate-binding protein -
  HEP85_RS21970 (HEP85_22200) - 5025749..5026498 (-) 750 WP_369657802.1 SLATT domain-containing protein -
  HEP85_RS21975 (HEP85_22205) - 5026834..5027184 (+) 351 WP_168529245.1 YbaB/EbfC family nucleoid-associated protein -
  HEP85_RS21980 (HEP85_22210) recR 5027243..5027842 (+) 600 WP_168529246.1 recombination mediator RecR Machinery gene
  HEP85_RS21985 (HEP85_22215) - 5027835..5028494 (+) 660 WP_168529247.1 DUF5063 domain-containing protein -
  HEP85_RS21990 (HEP85_22220) - 5028910..5030187 (+) 1278 WP_168529248.1 aspartate kinase -
  HEP85_RS21995 (HEP85_22225) - 5030187..5031326 (+) 1140 WP_168529249.1 aspartate-semialdehyde dehydrogenase -
  HEP85_RS22000 (HEP85_22230) - 5031792..5032463 (+) 672 WP_168529250.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21866.30 Da        Isoelectric Point: 4.9908

>NTDB_id=382341 HEP85_RS21980 WP_168529246.1 5027243..5027842(+) (recR) [Streptomyces sp. RPA4-2]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKARVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGVVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=382341 HEP85_RS21980 WP_168529246.1 5027243..5027842(+) (recR) [Streptomyces sp. RPA4-2]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGACGGACGTCCGCCGGCTCGCGCAGTGCCTCATGGAGGTCAAGGCGAGGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCACAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGATCTGTCGGTG
ATCTGCGTGGTCGAGGAACCGAAGGACGTCGTCGCGGTCGAGCGGACGCGTGAGTTCCGGGGGAAGTACCACGTGCTCGG
CGGAGCGATCAGCCCGATCGAAGGTGTGGGCCCGGACGACCTGCGGATAAGGGAACTCCTCGCCCGCCTCGCGGACGGCG
TGGTCACGGAACTCATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCCACGGCCACGTATCTCGCCCGCATGATCAAG
CCCATGGGCCTCAGGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452