Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GHB95_RS12120 Genome accession   NZ_CP050930
Coordinates   2107687..2108337 (-) Length   216 a.a.
NCBI ID   WP_272898944.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102687..2113337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHB95_RS11015 (GHB95_10950) - 2103741..2104142 (-) 402 Protein_2131 pilin -
  GHB95_RS11020 (GHB95_10955) lpxC 2104270..2105193 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GHB95_RS11025 (GHB95_10960) - 2105768..2106077 (-) 310 Protein_2133 pilin -
  GHB95_RS11030 (GHB95_10965) - 2106116..2106490 (-) 375 Protein_2134 pilin -
  GHB95_RS11035 (GHB95_10970) - 2106933..2107283 (-) 351 Protein_2135 pilin -
  GHB95_RS11040 (GHB95_10975) - 2107310..2107660 (-) 351 Protein_2136 pilin -
  GHB95_RS12120 pilE 2107687..2108337 (-) 651 WP_272898944.1 pilin Machinery gene
  GHB95_RS11055 - 2108453..2108852 (-) 400 Protein_2138 pilin -
  GHB95_RS11060 (GHB95_10995) - 2108987..2109376 (-) 390 Protein_2139 pilin -
  GHB95_RS11065 (GHB95_11000) - 2110175..2110300 (+) 126 Protein_2140 IS110 family transposase -
  GHB95_RS11070 (GHB95_11005) - 2110849..2111538 (-) 690 WP_050157270.1 M48 family metallopeptidase -
  GHB95_RS11075 (GHB95_11010) - 2111535..2112278 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  GHB95_RS11080 (GHB95_11015) gmhB 2112308..2112871 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23452.33 Da        Isoelectric Point: 9.5305

>NTDB_id=382300 GHB95_RS12120 WP_272898944.1 2107687..2108337(-) (pilE) [Neisseria gonorrhoeae strain NG211]
MASPASNIKGKYVQKVEVNNGVVTATMASSNVNKEIKDKKLSLWAKREDGSVKWFCGQPVTRANADAAKDDVNAAKDTNK
IETKHLPSTCRDESSAGCTKTPEYYLNHGTWPEDNTSAGVASSAEIKGKYVQKVEVAKGVVTATMKSDGVNKEIKGKKLS
LWGRREDGSVKWFCGQPVKRDNAKADNDDVKADAADKDKIETKHLPSTCRDTSSAK

Nucleotide


Download         Length: 651 bp        

>NTDB_id=382300 GHB95_RS12120 WP_272898944.1 2107687..2108337(-) (pilE) [Neisseria gonorrhoeae strain NG211]
GTGGCATCCCCCGCCTCCAACATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCACAAT
GGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCGCCAACGCCGACGCCGCCAAAGACGACGTCAACGCCGCCAAAGACACCAACAAA
ATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCACAAAAACACCCGAATATTACCTGAA
TCACGGCACATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCTCCGCCGAAATCAAAGGCAAATATGTTCAGAAAG
TTGAAGTCGCAAAAGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCC
CTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAAAGCCGACAA
CGACGACGTCAAAGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGATACGTCAT
CTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(5-91)

Pilin (bacterial filament) (Pilin)

(99-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.221

52.315

0.394
  pilE Neisseria gonorrhoeae MS11

74.336

52.315

0.389

Multiple sequence alignment