Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GHB95_RS12005 Genome accession   NZ_CP050930
Coordinates   499731..500165 (-) Length   144 a.a.
NCBI ID   WP_050157571.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494731..505165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHB95_RS02620 (GHB95_02630) - 495143..495601 (-) 459 WP_003688008.1 cytochrome c -
  GHB95_RS02625 (GHB95_02635) - 495720..496541 (+) 822 WP_003688009.1 SDR family oxidoreductase -
  GHB95_RS02630 (GHB95_02640) yciA 496592..497038 (-) 447 WP_002230436.1 acyl-CoA thioester hydrolase YciA -
  GHB95_RS02635 (GHB95_02645) - 497796..497945 (-) 150 WP_153707856.1 hypothetical protein -
  GHB95_RS02640 (GHB95_02650) - 497959..498779 (-) 821 Protein_515 opacity family porin -
  GHB95_RS02645 (GHB95_02655) - 499322..499678 (-) 357 Protein_516 pilin -
  GHB95_RS12005 pilE 499731..500165 (-) 435 WP_050157571.1 pilin Machinery gene
  GHB95_RS02660 (GHB95_02670) - 500217..500525 (+) 309 Protein_518 NAD(P)-dependent oxidoreductase -
  GHB95_RS02665 (GHB95_02675) metG 500600..502654 (-) 2055 WP_050155740.1 methionine--tRNA ligase -
  GHB95_RS02670 (GHB95_02680) glmS 502770..504608 (-) 1839 WP_003697846.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.38 Da        Isoelectric Point: 8.0249

>NTDB_id=382299 GHB95_RS12005 WP_050157571.1 499731..500165(-) (pilE) [Neisseria gonorrhoeae strain NG211]
MASASEIKGKYVESVTVEKGVVTAKMLSSGVNNEIKNKKLSLWAKREAGSVKWFCGQPVTRDNANAANDDTVTADTDTNG
KIDTKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIETKHLPSTCRDKSSAE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=382299 GHB95_RS12005 WP_050157571.1 499731..500165(-) (pilE) [Neisseria gonorrhoeae strain NG211]
GTGGCATCCGCTTCAGAAATCAAAGGCAAATATGTTGAAAGCGTTACGGTCGAAAAAGGCGTCGTTACCGCCAAAATGCT
TTCAAGCGGCGTAAACAATGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAACGCCAACGCCGCCAACGACGACACCGTCACCGCCGACACCGACACCAACGGC
AAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGT
TACGCGCGACAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGAAACCAAGCACCTGC
CGTCAACCTGCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.652

63.889

0.451
  pilE Neisseria gonorrhoeae MS11

71.591

61.111

0.438