Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   HFD81_RS18240 Genome accession   NZ_CP050911
Coordinates   3787838..3788473 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain DT-Ab020     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3782838..3793473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD81_RS18220 (HFD81_18220) - 3782916..3783731 (+) 816 WP_000011159.1 DsbC family protein -
  HFD81_RS18225 (HFD81_18225) - 3783976..3785277 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  HFD81_RS18230 (HFD81_18230) thrC 3785333..3786472 (+) 1140 WP_000063593.1 threonine synthase -
  HFD81_RS18235 (HFD81_18235) pbpG 3786579..3787625 (-) 1047 WP_003384760.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  HFD81_RS18240 (HFD81_18240) letA 3787838..3788473 (+) 636 WP_000633799.1 response regulator Regulator
  HFD81_RS18245 (HFD81_18245) pilS 3788484..3790052 (+) 1569 WP_001160333.1 sensor histidine kinase Regulator
  HFD81_RS18250 (HFD81_18250) - 3790077..3791498 (+) 1422 WP_000840549.1 sigma-54-dependent transcriptional regulator -
  HFD81_RS18255 (HFD81_18255) - 3791502..3792686 (-) 1185 WP_000942504.1 S41 family peptidase -

Sequence


Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=382073 HFD81_RS18240 WP_000633799.1 3787838..3788473(+) (letA) [Acinetobacter baumannii strain DT-Ab020]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=382073 HFD81_RS18240 WP_000633799.1 3787838..3788473(+) (letA) [Acinetobacter baumannii strain DT-Ab020]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCAGGCATCGGTGGTGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAACCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55

  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55