Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | FYA21_RS12645 | Genome accession | NZ_CP043180 |
| Coordinates | 2597869..2598249 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain PG20180064 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2592869..2603249
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA21_RS12615 (FYA21_12615) | kdsB | 2593775..2594536 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| FYA21_RS12620 (FYA21_12620) | - | 2594548..2595525 (+) | 978 | WP_096640530.1 | DNA polymerase III subunit delta' | - |
| FYA21_RS12625 (FYA21_12625) | - | 2595537..2595878 (+) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| FYA21_RS12630 (FYA21_12630) | - | 2595896..2596669 (+) | 774 | WP_005110997.1 | TatD family hydrolase | - |
| FYA21_RS12635 (FYA21_12635) | - | 2596707..2597315 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| FYA21_RS12640 (FYA21_12640) | - | 2597325..2597879 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| FYA21_RS12645 (FYA21_12645) | xcpV | 2597869..2598249 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| FYA21_RS12650 (FYA21_12650) | xcpW | 2598249..2598950 (+) | 702 | WP_004747380.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| FYA21_RS12655 (FYA21_12655) | gspK | 2598950..2599909 (+) | 960 | WP_096640532.1 | type II secretion system minor pseudopilin GspK | - |
| FYA21_RS12660 (FYA21_12660) | - | 2600139..2600735 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| FYA21_RS12665 (FYA21_12665) | ung | 2600786..2601499 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| FYA21_RS12670 (FYA21_12670) | - | 2601496..2602620 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| FYA21_RS12675 (FYA21_12675) | tadA | 2602627..2603130 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=382025 FYA21_RS12645 WP_000836911.1 2597869..2598249(+) (xcpV) [Acinetobacter baumannii strain PG20180064]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=382025 FYA21_RS12645 WP_000836911.1 2597869..2598249(+) (xcpV) [Acinetobacter baumannii strain PG20180064]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |