Detailed information NTG0381995

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: FYA21_RS02230
• Genome accession: NZ_CP043180
• Coordinates: 446551..446973 (-)
• Length: 140 a.a.
• NCBI ID: WP_096640146.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain PG20180064
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 441551..451973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYA21_RS02200 (FYA21_02200)	-	442079..443113 (+)	1035	WP_001189451.1	lipase secretion chaperone	-
FYA21_RS02205 (FYA21_02205)	-	443228..444169 (+)	942	WP_085916958.1	lipase family alpha/beta hydrolase	-
FYA21_RS02210 (FYA21_02210)	rplS	444222..444590 (-)	369	WP_000014562.1	50S ribosomal protein L19	-
FYA21_RS02215 (FYA21_02215)	trmD	444798..445538 (-)	741	WP_000464599.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FYA21_RS02220 (FYA21_02220)	rimM	445584..446132 (-)	549	WP_000189236.1	ribosome maturation factor RimM	-
FYA21_RS02225 (FYA21_02225)	rpsP	446152..446403 (-)	252	WP_000260334.1	30S ribosomal protein S16	-
FYA21_RS02230 (FYA21_02230)	comF	446551..446973 (-)	423	WP_096640146.1	type IV pilin protein	Machinery gene
FYA21_RS02235 (FYA21_02235)	-	446973..447536 (-)	564	WP_024436448.1	type IV pilin protein	-
FYA21_RS02240 (FYA21_02240)	-	447546..451652 (-)	4107	WP_024436449.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 15526.60 Da
• Isoelectric Point: 9.2464

>NTDB_id=381995 FYA21_RS02230 WP_096640146.1 446551..446973(-) (comF) [Acinetobacter baumannii strain PG20180064]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQAGNGTVLLNSDGQKCWTKGHSCTTSTTSNWDGK

Nucleotide

• Length: 423 bp

>NTDB_id=381995 FYA21_RS02230 WP_096640146.1 446551..446973(-) (comF) [Acinetobacter baumannii strain PG20180064]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGCTGGAAATGGGACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCATTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGCAAGTAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (28-107)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	54.167	100	0.557
pilE	Acinetobacter baumannii D1279779	52.941	97.143	0.514
pilA2	Legionella pneumophila strain ERS1305867	39.416	97.857	0.386
pilA2	Legionella pneumophila str. Paris	39.416	97.857	0.386