Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSUW23_RS07710 Genome accession   NC_014479
Coordinates   1471673..1471951 (+) Length   92 a.a.
NCBI ID   WP_003222317.1    Uniprot ID   A0A9Q4H8P7
Organism   Bacillus spizizenii str. W23     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1466673..1476951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUW23_RS07690 (BSUW23_07425) - 1467865..1468776 (+) 912 WP_003222326.1 ketopantoate reductase family protein -
  BSUW23_RS07695 (BSUW23_07430) - 1468807..1470039 (-) 1233 WP_003222324.1 aminopeptidase -
  BSUW23_RS07700 (BSUW23_07435) - 1470149..1470283 (-) 135 WP_003222322.1 protein YkpC -
  BSUW23_RS07705 (BSUW23_07440) mreBH 1470385..1471392 (-) 1008 WP_003222320.1 cell shape-determining protein MreBH -
  BSUW23_RS07710 (BSUW23_07445) abrB 1471673..1471951 (+) 279 WP_003222317.1 transcriptional regulator AbhA Regulator
  BSUW23_RS07715 (BSUW23_07450) kinC 1472144..1473430 (+) 1287 WP_003222315.1 two-component sensor histidine kinase KinC -
  BSUW23_RS07720 (BSUW23_07455) - 1473447..1474274 (+) 828 WP_003222313.1 gamma-glutamylcyclotransferase -
  BSUW23_RS07725 (BSUW23_07460) ktrC 1474346..1475011 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  BSUW23_RS07730 (BSUW23_07465) ade 1475169..1476902 (+) 1734 WP_003222307.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10290.08 Da        Isoelectric Point: 5.8808

>NTDB_id=38185 BSUW23_RS07710 WP_003222317.1 1471673..1471951(+) (abrB) [Bacillus spizizenii str. W23]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCFMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=38185 BSUW23_RS07710 WP_003222317.1 1471673..1471951(+) (abrB) [Bacillus spizizenii str. W23]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGGCGTATTGTCATGCCGATAGAATTAAGACGGGCACTTGA
TATTGCTATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCCTGAAAAAGTACAAACCTCATGGCGTCT
GTTTTATGACCGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment