Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BSUW23_RS08600 | Genome accession | NC_014479 |
| Coordinates | 1646616..1647395 (+) | Length | 259 a.a. |
| NCBI ID | WP_003220850.1 | Uniprot ID | G4NSM6 |
| Organism | Bacillus spizizenii str. W23 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1621105..1662089 | 1646616..1647395 | within | 0 |
Gene organization within MGE regions
Location: 1621105..1662089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSUW23_RS08475 (BSUW23_08200) | smc | 1621806..1625366 (+) | 3561 | WP_003221570.1 | chromosome segregation protein SMC | - |
| BSUW23_RS08480 (BSUW23_08205) | ftsY | 1625386..1626375 (+) | 990 | WP_003221572.1 | signal recognition particle-docking protein FtsY | - |
| BSUW23_RS08490 (BSUW23_08215) | - | 1626510..1627609 (+) | 1100 | WP_230939496.1 | IS3 family transposase | - |
| BSUW23_RS08495 (BSUW23_08220) | - | 1627673..1628158 (-) | 486 | WP_003220807.1 | Ig-like domain-containing protein | - |
| BSUW23_RS08500 (BSUW23_08225) | - | 1628337..1628669 (+) | 333 | WP_003220809.1 | putative DNA-binding protein | - |
| BSUW23_RS08505 (BSUW23_08230) | ffh | 1628683..1630023 (+) | 1341 | WP_003220811.1 | signal recognition particle protein | - |
| BSUW23_RS08510 (BSUW23_08235) | rpsP | 1630129..1630401 (+) | 273 | WP_003220815.1 | 30S ribosomal protein S16 | - |
| BSUW23_RS08515 (BSUW23_08240) | - | 1630401..1630646 (+) | 246 | WP_003220817.1 | KH domain-containing protein | - |
| BSUW23_RS08520 (BSUW23_08245) | - | 1630768..1631154 (+) | 387 | WP_003220819.1 | YlqD family protein | - |
| BSUW23_RS08525 (BSUW23_08250) | rimM | 1631159..1631683 (+) | 525 | WP_003220821.1 | ribosome maturation factor RimM | - |
| BSUW23_RS08530 (BSUW23_08255) | trmD | 1631680..1632411 (+) | 732 | WP_003220823.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BSUW23_RS08535 (BSUW23_08260) | rplS | 1632551..1632898 (+) | 348 | WP_003220825.1 | 50S ribosomal protein L19 | - |
| BSUW23_RS08540 (BSUW23_08265) | ylqF | 1633043..1633891 (+) | 849 | WP_003220827.1 | ribosome biogenesis GTPase YlqF | - |
| BSUW23_RS08545 (BSUW23_08270) | rnhB | 1633962..1634729 (+) | 768 | WP_003220829.1 | ribonuclease HII | - |
| BSUW23_RS08550 (BSUW23_08275) | - | 1634758..1636488 (+) | 1731 | WP_003220832.1 | hypothetical protein | - |
| BSUW23_RS08555 (BSUW23_08280) | - | 1636485..1636766 (+) | 282 | WP_003220834.1 | FlhB-like flagellar biosynthesis protein | - |
| BSUW23_RS08560 (BSUW23_08285) | sucC | 1636940..1638097 (+) | 1158 | WP_003220835.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BSUW23_RS08565 (BSUW23_08290) | sucD | 1638126..1639028 (+) | 903 | WP_003220837.1 | succinate--CoA ligase subunit alpha | - |
| BSUW23_RS08570 (BSUW23_08295) | dprA | 1639089..1639982 (+) | 894 | WP_003220839.1 | DNA-processing protein DprA | Machinery gene |
| BSUW23_RS08575 (BSUW23_08300) | topA | 1640169..1642244 (+) | 2076 | WP_003220843.1 | type I DNA topoisomerase | - |
| BSUW23_RS08580 (BSUW23_08305) | trmFO | 1642320..1643627 (+) | 1308 | WP_003220844.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BSUW23_RS08585 (BSUW23_08310) | xerC | 1643695..1644609 (+) | 915 | WP_003220846.1 | tyrosine recombinase XerC | - |
| BSUW23_RS08590 (BSUW23_08315) | clpQ | 1644622..1645167 (+) | 546 | WP_003220848.1 | ATP-dependent protease subunit ClpQ | - |
| BSUW23_RS08595 | hslU | 1645184..1646576 (+) | 1393 | Protein_1635 | HslU--HslV peptidase ATPase subunit | - |
| BSUW23_RS08600 (BSUW23_08330) | codY | 1646616..1647395 (+) | 780 | WP_003220850.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BSUW23_RS08605 (BSUW23_08335) | flgB | 1647776..1648165 (+) | 390 | WP_003220852.1 | flagellar basal body rod protein FlgB | - |
| BSUW23_RS08610 (BSUW23_08340) | flgC | 1648165..1648617 (+) | 453 | WP_003220854.1 | flagellar basal body rod protein FlgC | - |
| BSUW23_RS08615 (BSUW23_08345) | fliE | 1648629..1648949 (+) | 321 | WP_003238544.1 | flagellar hook-basal body complex protein FliE | - |
| BSUW23_RS08620 (BSUW23_08350) | fliF | 1648995..1650605 (+) | 1611 | WP_079996358.1 | flagellar basal-body MS-ring/collar protein FliF | - |
| BSUW23_RS08625 (BSUW23_08355) | fliG | 1650618..1651634 (+) | 1017 | WP_003220860.1 | flagellar motor switch protein FliG | - |
| BSUW23_RS08630 (BSUW23_08360) | fliH | 1651627..1652379 (+) | 753 | WP_003220862.1 | flagellar assembly protein FliH | - |
| BSUW23_RS08635 (BSUW23_08365) | fliI | 1652376..1653692 (+) | 1317 | WP_003220864.1 | flagellar protein export ATPase FliI | - |
| BSUW23_RS08640 (BSUW23_08370) | fliJ | 1653695..1654138 (+) | 444 | WP_003220866.1 | flagellar export protein FliJ | - |
| BSUW23_RS08645 (BSUW23_08375) | - | 1654150..1654764 (+) | 615 | WP_003220869.1 | MotE family protein | - |
| BSUW23_RS08650 (BSUW23_08380) | - | 1654776..1656239 (+) | 1464 | WP_003220871.1 | flagellar hook-length control protein FliK | - |
| BSUW23_RS08655 (BSUW23_08385) | flgD | 1656236..1656658 (+) | 423 | WP_003220873.1 | flagellar hook assembly protein FlgD | - |
| BSUW23_RS08660 (BSUW23_08390) | flgG | 1656680..1657474 (+) | 795 | WP_003220874.1 | flagellar basal body rod protein FlgG | - |
| BSUW23_RS08665 (BSUW23_08395) | swrD | 1657514..1657729 (+) | 216 | WP_003220876.1 | swarming motility protein SwrD | - |
| BSUW23_RS08670 (BSUW23_08400) | fliL | 1657726..1658151 (+) | 426 | WP_003220878.1 | flagellar basal body-associated protein FliL | - |
| BSUW23_RS08675 (BSUW23_08405) | fliM | 1658185..1659183 (+) | 999 | WP_003220879.1 | flagellar motor switch protein FliM | - |
| BSUW23_RS08680 (BSUW23_08410) | fliY | 1659173..1660312 (+) | 1140 | WP_003220881.1 | flagellar motor switch phosphatase FliY | - |
| BSUW23_RS08685 (BSUW23_08415) | cheY | 1660338..1660700 (+) | 363 | WP_003220882.1 | chemotaxis protein CheY | - |
| BSUW23_RS08690 (BSUW23_08420) | fliZ | 1660715..1661374 (+) | 660 | WP_003220884.1 | flagella biosynthesis regulatory protein FliZ | - |
| BSUW23_RS08695 (BSUW23_08425) | fliP | 1661367..1662032 (+) | 666 | WP_013307980.1 | flagellar type III secretion system pore protein FliP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 29013.22 Da Isoelectric Point: 4.6514
>NTDB_id=38187 BSUW23_RS08600 WP_003220850.1 1646616..1647395(+) (codY) [Bacillus spizizenii str. W23]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
Nucleotide
Download Length: 780 bp
>NTDB_id=38187 BSUW23_RS08600 WP_003220850.1 1646616..1647395(+) (codY) [Bacillus spizizenii str. W23]
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTATTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACTTGTTTCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGGATTACCC
GTTCTGTTATTGTGAATGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTATTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACTTGTTTCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGGATTACCC
GTTCTGTTATTGTGAATGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.451 |
98.456 |
0.467 |