Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HC362_RS14675 Genome accession   NZ_CP050693
Coordinates   3407327..3407926 (-) Length   199 a.a.
NCBI ID   WP_209266261.1    Uniprot ID   A0ABS3WWG1
Organism   Streptomyces sp. 891-h     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3402327..3412926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC362_RS14655 (HC362_14595) - 3403295..3403870 (-) 576 WP_243084369.1 SigE family RNA polymerase sigma factor -
  HC362_RS14660 (HC362_14600) - 3404268..3405548 (-) 1281 WP_243084371.1 aspartate kinase -
  HC362_RS14665 (HC362_14605) - 3405781..3406539 (+) 759 WP_243084372.1 VWA domain-containing protein -
  HC362_RS14670 (HC362_14610) - 3406548..3407210 (-) 663 WP_209266260.1 DUF5063 domain-containing protein -
  HC362_RS14675 (HC362_14615) recR 3407327..3407926 (-) 600 WP_209266261.1 recombination mediator RecR Machinery gene
  HC362_RS14680 (HC362_14620) - 3408360..3408695 (-) 336 WP_243084374.1 YbaB/EbfC family nucleoid-associated protein -
  HC362_RS14685 (HC362_14625) - 3408824..3411304 (-) 2481 WP_243084376.1 DNA polymerase III subunit gamma and tau -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21709.94 Da        Isoelectric Point: 4.7614

>NTDB_id=381728 HC362_RS14675 WP_209266261.1 3407327..3407926(-) (recR) [Streptomyces sp. 891-h]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLASALTEVKEKVRFCAVCGNVAQEEQCRVCLDPRRDPSI
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLSRLADGTVTELILATDPNLEGEATATYLARMVS
AMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=381728 HC362_RS14675 WP_209266261.1 3407327..3407926(-) (recR) [Streptomyces sp. 891-h]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTCCACATCCTGCAGGCCGAGCCCGCCGACGTACGCCGGCTCGCCAGCGCGCTGACCGAGGTCAAGGAGAAGGTCA
GATTCTGTGCGGTGTGCGGCAACGTCGCCCAGGAGGAGCAGTGCCGGGTCTGTCTCGATCCGCGCCGTGACCCTTCGATC
ATCTGTGTGGTCGAGGAGCCCAAGGATGTCGTGGCGATCGAACGGACCCGCGAGTTCCGGGGCCGGTACCACGTGCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCCGACGATCTGCGGATAAGGGAGCTGCTCTCCCGTCTCGCCGACGGGA
CGGTCACCGAGCTGATCCTCGCCACGGACCCCAACCTCGAGGGTGAGGCAACGGCCACGTATCTCGCGCGGATGGTCTCC
GCGATGGGGCTGAAGGTGACGCGGCTGGCGAGCGGACTTCCCGTCGGGGGAGACCTGGAGTACGCGGACGAGGTCACTCT
GGGGCGGGCCTTCGAGGGAAGGCGGCTTCTCGATGTGTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

45.361

97.487

0.442