Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HB370_RS22925 Genome accession   NZ_CP050504
Coordinates   5026756..5028165 (-) Length   469 a.a.
NCBI ID   WP_030781596.1    Uniprot ID   A0ABW6Z467
Organism   Streptomyces sp. DSM 40868     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5021756..5033165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB370_RS22900 (HB370_22900) - 5022073..5022672 (-) 600 WP_037701471.1 hypothetical protein -
  HB370_RS22905 (HB370_22905) - 5022714..5023253 (-) 540 WP_030781607.1 SigE family RNA polymerase sigma factor -
  HB370_RS22910 (HB370_22910) - 5023528..5024403 (-) 876 WP_030781604.1 A/G-specific adenine glycosylase -
  HB370_RS22915 (HB370_22915) - 5024583..5025419 (+) 837 WP_208974431.1 hypothetical protein -
  HB370_RS22920 (HB370_22920) disA 5025550..5026674 (-) 1125 WP_030781598.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HB370_RS22925 (HB370_22925) radA 5026756..5028165 (-) 1410 WP_030781596.1 DNA repair protein RadA Machinery gene
  HB370_RS22930 (HB370_22930) - 5028353..5030236 (+) 1884 WP_037701486.1 hypothetical protein -
  HB370_RS22935 (HB370_22935) - 5030285..5031142 (-) 858 WP_030781592.1 hypothetical protein -
  HB370_RS22940 (HB370_22940) - 5031214..5032146 (+) 933 WP_030781589.1 Ppx/GppA phosphatase family protein -
  HB370_RS22945 (HB370_22945) - 5032240..5033052 (+) 813 WP_030781586.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49658.82 Da        Isoelectric Point: 8.0106

>NTDB_id=381027 HB370_RS22925 WP_030781596.1 5026756..5028165(-) (radA) [Streptomyces sp. DSM 40868]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVSTSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASAEHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLAAVL
GHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPPGMKVLEVADIGDALRVLPRSRRREAPREAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=381027 HB370_RS22925 WP_030781596.1 5026756..5028165(-) (radA) [Streptomyces sp. DSM 40868]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGCCCGTCGTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACGACGGCGCCGGGCC
GGGTGAGCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCACCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTGCCGGGCGCGGTGGTCCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTGGCCGCCAAGTCGGCGAGCGCCGAGCACCGCACCCTCTATGTCACCGGCGAGGAGTCCGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCGGCGCCCTGGACGACCATCTGTACCTGGCCGCGGAGACCGACCTGGCCGCCGTCCTC
GGCCATCTGGACGAGGTCAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCCGGGAAGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTGCGGGGCGTGAAGAACCGGTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGCCGCGCCGAGCCGGTGCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTGGACTCGCAGATC
CCCTCTCCCCGGCGTACGACGTCCGGCCTGGAGACCTCGCGGGTGTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGGGTGAAGCTGTCGGAGCCCGCCGCCGACCTCG
CCGTCGCCCTCGCCCTGGCCTCCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGCCTG
GCCGGCGAGGTCAGACGGGTCACGGGGGTGCAGCGCAGGCTCGCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTCGT
ACCGTCCGACCCGGGGAAGGTGCCGCCCGGCATGAAGGTGCTGGAGGTCGCCGACATAGGGGACGCGCTGCGGGTTCTGC
CGCGCTCCCGTCGCCGAGAGGCCCCACGGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.902

96.162

0.422
  radA Streptococcus mitis NCTC 12261

43.902

96.162

0.422
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus pneumoniae Rx1

43.459

96.162

0.418
  radA Streptococcus pneumoniae D39

43.459

96.162

0.418
  radA Streptococcus pneumoniae R6

43.459

96.162

0.418
  radA Streptococcus pneumoniae TIGR4

43.459

96.162

0.418

Multiple sequence alignment