Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FXO12_RS20130 Genome accession   NZ_CP043060
Coordinates   4462244..4462651 (+) Length   135 a.a.
NCBI ID   WP_014720321.1    Uniprot ID   A0A0R3C615
Organism   Pseudomonas sp. J380     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4457244..4467651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXO12_RS20105 (FXO12_20105) pyrR 4458250..4458756 (-) 507 WP_019817751.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  FXO12_RS20110 (FXO12_20110) ruvX 4458889..4459326 (-) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  FXO12_RS20115 (FXO12_20115) - 4459326..4459895 (-) 570 WP_057976477.1 YqgE/AlgH family protein -
  FXO12_RS20120 (FXO12_20120) - 4460069..4460974 (-) 906 WP_057976479.1 energy transducer TonB -
  FXO12_RS20125 (FXO12_20125) gshB 4461052..4462005 (-) 954 WP_034128936.1 glutathione synthase -
  FXO12_RS20130 (FXO12_20130) pilG 4462244..4462651 (+) 408 WP_014720321.1 twitching motility response regulator PilG Regulator
  FXO12_RS20135 (FXO12_20135) pilH 4462698..4463063 (+) 366 WP_057976481.1 twitching motility response regulator PilH -
  FXO12_RS20140 (FXO12_20140) - 4463075..4463599 (+) 525 WP_057976483.1 chemotaxis protein CheW -
  FXO12_RS20145 (FXO12_20145) - 4463596..4465647 (+) 2052 WP_034128934.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14924.48 Da        Isoelectric Point: 7.3841

>NTDB_id=380436 FXO12_RS20130 WP_014720321.1 4462244..4462651(+) (pilG) [Pseudomonas sp. J380]
MEQHSNALKVMVIDDSKTIRRTAETLLKNMGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=380436 FXO12_RS20130 WP_014720321.1 4462244..4462651(+) (pilG) [Pseudomonas sp. J380]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAAACGATCCGCCGCACCGCCGAGACGCTGTT
GAAGAACATGGGGTGCGAGGTCATCACGGCGATCGACGGTTTCGACGCCCTGGCCCGTATTGTTGATCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACCTGCGCCCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGTTGTCTTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTGGGTGTCGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGGGCGATCAAGGCCTACGTGCCTGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R3C615

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72

92.593

0.667
  vicR Streptococcus mutans UA159

38.889

93.333

0.363

Multiple sequence alignment