Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FXN63_RS23910 Genome accession   NZ_CP043046
Coordinates   5553697..5555184 (+) Length   495 a.a.
NCBI ID   WP_148818013.1    Uniprot ID   -
Organism   Pigmentiphaga aceris strain Mada1488     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5548697..5560184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN63_RS23880 (FXN63_23880) - 5548765..5549406 (+) 642 WP_148818008.1 OmpW family outer membrane protein -
  FXN63_RS27190 - 5549460..5549679 (-) 220 Protein_4737 LysR family transcriptional regulator -
  FXN63_RS23885 (FXN63_23885) - 5549908..5550918 (+) 1011 WP_148818009.1 KpsF/GutQ family sugar-phosphate isomerase -
  FXN63_RS23890 (FXN63_23890) - 5550923..5551534 (+) 612 WP_148818010.1 HAD hydrolase family protein -
  FXN63_RS23895 (FXN63_23895) lptC 5551538..5552146 (+) 609 WP_148818011.1 LPS export ABC transporter periplasmic protein LptC -
  FXN63_RS23900 (FXN63_23900) lptA 5552166..5552852 (+) 687 WP_246164959.1 lipopolysaccharide transport periplasmic protein LptA -
  FXN63_RS23905 (FXN63_23905) lptB 5552849..5553658 (+) 810 WP_148818012.1 LPS export ABC transporter ATP-binding protein -
  FXN63_RS23910 (FXN63_23910) rpoN/rpoN1 5553697..5555184 (+) 1488 WP_148818013.1 RNA polymerase factor sigma-54 Machinery gene
  FXN63_RS23915 (FXN63_23915) raiA 5555471..5555803 (+) 333 WP_148818014.1 ribosome-associated translation inhibitor RaiA -
  FXN63_RS23920 (FXN63_23920) - 5556105..5556572 (+) 468 WP_148818015.1 PTS sugar transporter subunit IIA -
  FXN63_RS23925 (FXN63_23925) hprK 5556577..5557506 (+) 930 WP_148818016.1 HPr(Ser) kinase/phosphatase -
  FXN63_RS23930 (FXN63_23930) rapZ 5557559..5558461 (+) 903 WP_148818017.1 RNase adapter RapZ -
  FXN63_RS27315 (FXN63_23935) - 5558542..5559681 (+) 1140 WP_222863964.1 septal ring lytic transglycosylase RlpA family protein -
  FXN63_RS26835 - 5559903..5560070 (-) 168 WP_187395014.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54682.82 Da        Isoelectric Point: 5.0826

>NTDB_id=380316 FXN63_RS23910 WP_148818013.1 5553697..5555184(+) (rpoN/rpoN1) [Pigmentiphaga aceris strain Mada1488]
MLKASLQLRTAQHLTLTPQLQQAIRLLQLSTLELEQEIEQVLRDNPLLEREDEPAQVSLHADNDMSNGSDTSHQDAPEPA
QEVDMERDSTTGGEDAPPMRETDSLWNDLPASRGDDDDEPSGPQIAASTATLREHLLEQLSVTLGSARDKALAQLLIDAL
DDNGYLSVPLEEVAEMLPPELEIDQDELRTALALVQSFDPPGVGARDTAECIGLQLRNPDVTRLPEARDPSVLSCARAIA
RAHLPLLAARDYAKLRRSLKCDDDTLRSAQALIRRLTPRPGSQFSATAADYVVPDVVVRKLGKQWVVHLNSEAMPRLRIN
HLYAQLLKSDRSCAHAGLSAQLQEARWLIRNVRQRFDTILRVSQAIVDRQHGFFDHGEVAMRPLVLREIADTLGLHESTI
SRVTTQKYMLTPFGTFELKHFFGSHVATETGGAASSTAIRALIKQLVSAEDPTQPLSDSQLAQTLGEQGIVVARRTVAKY
REALQIPPVSLRKSI

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=380316 FXN63_RS23910 WP_148818013.1 5553697..5555184(+) (rpoN/rpoN1) [Pigmentiphaga aceris strain Mada1488]
ATGCTCAAGGCCTCGCTCCAGCTTCGCACTGCGCAGCACCTGACGCTGACGCCCCAACTGCAACAGGCGATTCGCCTGCT
GCAGTTGTCGACGCTCGAACTCGAACAAGAGATCGAACAAGTCCTGCGTGACAACCCGCTGCTGGAACGCGAGGACGAAC
CGGCCCAGGTTTCGCTGCACGCCGACAATGACATGTCCAACGGCAGCGACACCTCGCATCAGGACGCGCCCGAGCCCGCC
CAGGAAGTCGACATGGAGCGGGACTCCACCACCGGGGGCGAAGATGCGCCGCCGATGCGTGAAACCGATTCGCTGTGGAA
CGACCTGCCTGCCTCGCGCGGCGACGATGACGACGAACCGAGCGGTCCGCAGATCGCCGCCAGCACCGCCACGCTGCGCG
AACACCTGCTGGAACAGTTGTCGGTCACGCTTGGCTCGGCCCGTGACAAGGCGCTGGCACAACTGCTGATCGATGCACTG
GATGACAACGGCTACCTGAGCGTACCGCTGGAAGAAGTGGCAGAAATGTTGCCGCCGGAACTGGAAATCGACCAGGACGA
ACTGCGCACGGCGCTGGCCCTGGTGCAGTCTTTCGATCCGCCTGGCGTGGGTGCGCGTGACACCGCCGAATGCATCGGCC
TGCAACTGCGCAATCCCGATGTCACCCGACTGCCCGAAGCACGCGATCCGTCGGTGCTGTCCTGCGCCCGCGCGATTGCG
CGTGCGCACTTGCCCTTGCTGGCGGCACGCGACTACGCCAAGCTGCGTCGCAGCCTGAAGTGCGATGACGACACCTTGCG
CTCGGCGCAGGCGCTGATCCGACGTCTGACGCCGCGTCCTGGTTCCCAGTTCTCTGCCACGGCGGCCGACTACGTGGTGC
CCGACGTGGTGGTGCGCAAGCTTGGCAAGCAGTGGGTCGTGCATCTGAATTCAGAAGCGATGCCACGTCTGCGCATCAAT
CATCTGTACGCCCAGCTGCTCAAGAGCGATCGCAGCTGCGCCCATGCCGGCCTGTCGGCACAGCTGCAAGAGGCCCGTTG
GCTGATCCGCAATGTGCGCCAGCGCTTCGACACCATCCTTCGGGTGTCGCAAGCCATTGTCGATCGTCAACATGGCTTCT
TCGATCATGGTGAAGTCGCCATGCGCCCGCTTGTGCTTCGCGAAATTGCGGATACACTGGGGCTGCACGAGTCGACCATT
TCTCGCGTCACTACGCAGAAGTACATGCTCACGCCGTTCGGTACCTTCGAACTCAAGCATTTCTTCGGTAGCCATGTCGC
GACGGAAACCGGTGGTGCCGCATCGTCAACCGCGATACGCGCCTTGATCAAACAGCTCGTCAGCGCGGAGGATCCTACCC
AGCCGCTTTCGGACAGTCAGCTTGCTCAGACCCTGGGTGAACAGGGCATCGTGGTCGCGCGCCGCACCGTCGCGAAGTAC
CGCGAAGCACTCCAGATCCCGCCGGTTTCCCTGCGCAAGTCGATCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(125-323)

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

56.202

100

0.586

Multiple sequence alignment