Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FRD49_RS17325 Genome accession   NZ_CP042994
Coordinates   3611022..3612443 (+) Length   473 a.a.
NCBI ID   WP_032011637.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3606022..3617443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS17305 (FRD49_17305) thrC 3606278..3607417 (+) 1140 WP_002048893.1 threonine synthase -
  FRD49_RS17310 (FRD49_17310) pbpG 3607526..3608572 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  FRD49_RS17315 (FRD49_17315) - 3608784..3609419 (+) 636 WP_000633799.1 response regulator -
  FRD49_RS17320 (FRD49_17320) pilS 3609430..3610998 (+) 1569 WP_031956174.1 sensor histidine kinase Regulator
  FRD49_RS17325 (FRD49_17325) pilR 3611022..3612443 (+) 1422 WP_032011637.1 sigma-54-dependent transcriptional regulator Regulator
  FRD49_RS17330 (FRD49_17330) - 3612447..3613631 (-) 1185 WP_004883636.1 S41 family peptidase -
  FRD49_RS17335 (FRD49_17335) gpmI 3613647..3615194 (-) 1548 WP_106479713.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FRD49_RS17340 (FRD49_17340) lptG 3615320..3616390 (-) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53161.34 Da        Isoelectric Point: 6.6688

>NTDB_id=380059 FRD49_RS17325 WP_032011637.1 3611022..3612443(+) (pilR) [Acinetobacter nosocomialis strain J1A]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEGAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIATVSQS
FQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=380059 FRD49_RS17325 WP_032011637.1 3611022..3612443(+) (pilR) [Acinetobacter nosocomialis strain J1A]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGATTAGACTTAGTCAAACATGTCTCTCAAAATTATACCAACACTCCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGCAGTTTTACAGGGGCAACGCAAGACAAACAGGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTTAGTATGCAGGTTAAATTACTACGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCTGA
TCAGGAAATTGATGTTGATTTTCGGGTGATTAGCGCGAGTCATCAAGACTTAGATTTGTTGGTTCGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACCGAGGGCGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCACATTTGCACCCTGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGCAACGGTATCTCAAAGC
TTTCAGAATCCTGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAGCGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.926

100

0.949
  pilR Pseudomonas aeruginosa PAK

50.763

97.04

0.493

Multiple sequence alignment