Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FRD49_RS02160 Genome accession   NZ_CP042994
Coordinates   455396..456031 (-) Length   211 a.a.
NCBI ID   WP_148356638.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450396..461031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS02125 (FRD49_02125) mlaE 450724..451500 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  FRD49_RS02130 (FRD49_02130) - 451500..452183 (+) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FRD49_RS02135 (FRD49_02135) - 452210..452851 (+) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  FRD49_RS02140 (FRD49_02140) - 452863..453150 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  FRD49_RS02145 (FRD49_02145) - 453225..454238 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  FRD49_RS02150 (FRD49_02150) - 454396..454977 (+) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  FRD49_RS02155 (FRD49_02155) - 454992..455393 (+) 402 WP_006582595.1 NUDIX hydrolase -
  FRD49_RS02160 (FRD49_02160) comF 455396..456031 (-) 636 WP_148356638.1 ComF family protein Machinery gene
  FRD49_RS02165 (FRD49_02165) recG 456024..458069 (-) 2046 WP_148356639.1 ATP-dependent DNA helicase RecG -
  FRD49_RS02170 (FRD49_02170) - 458090..458905 (+) 816 WP_006580703.1 NAD(P)H-binding protein -
  FRD49_RS02175 (FRD49_02175) adeT2 458985..459971 (+) 987 WP_148356640.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24658.88 Da        Isoelectric Point: 9.8677

>NTDB_id=380032 FRD49_RS02160 WP_148356638.1 455396..456031(-) (comF) [Acinetobacter nosocomialis strain J1A]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSILVACHYAYPINRIIQQYKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=380032 FRD49_RS02160 WP_148356638.1 455396..456031(-) (comF) [Acinetobacter nosocomialis strain J1A]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTATTCTTG
TGGCTTGCCACTACGCATATCCAATTAACCGCATAATTCAGCAGTACAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAGGTCTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATATCTAAACAACGCTTAAC
TGAACGCGGTTTTAATCAATCATTATTGCTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGGTTGTCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.261

100

0.953
  comF Acinetobacter baumannii D1279779

94.313

100

0.943

Multiple sequence alignment