Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HBN34_RS10300 Genome accession   NZ_CP050403
Coordinates   2153009..2153605 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain VB2486     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2148009..2158605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBN34_RS10265 (HBN34_10265) - 2148095..2148946 (-) 852 WP_001271636.1 AAA family ATPase -
  HBN34_RS10270 (HBN34_10270) - 2148976..2149362 (-) 387 WP_001206390.1 hypothetical protein -
  HBN34_RS10275 (HBN34_10275) - 2149355..2149615 (-) 261 WP_188146221.1 YcgL domain-containing protein -
  HBN34_RS10280 (HBN34_10280) - 2150103..2150267 (+) 165 WP_000086293.1 hypothetical protein -
  HBN34_RS10285 (HBN34_10285) - 2150338..2150679 (-) 342 WP_000367442.1 hypothetical protein -
  HBN34_RS10290 (HBN34_10290) - 2150810..2151076 (-) 267 WP_000183702.1 hypothetical protein -
  HBN34_RS10295 (HBN34_10295) - 2151579..2152703 (-) 1125 WP_000486131.1 ribonuclease D -
  HBN34_RS10300 (HBN34_10300) recR 2153009..2153605 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  HBN34_RS10305 (HBN34_10305) - 2153615..2153944 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  HBN34_RS10310 (HBN34_10310) - 2154210..2154446 (-) 237 WP_000917295.1 hypothetical protein -
  HBN34_RS10315 (HBN34_10315) - 2154624..2155811 (-) 1188 WP_001076388.1 O-succinylhomoserine sulfhydrylase -
  HBN34_RS10320 (HBN34_10320) - 2155945..2157030 (+) 1086 WP_000825833.1 alpha/beta fold hydrolase -
  HBN34_RS10325 (HBN34_10325) - 2157111..2157878 (-) 768 WP_000934174.1 class I SAM-dependent methyltransferase -
  HBN34_RS10330 (HBN34_10330) - 2158051..2158425 (-) 375 WP_000800035.1 TonB C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=379936 HBN34_RS10300 WP_000490551.1 2153009..2153605(-) (recR) [Acinetobacter baumannii strain VB2486]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=379936 HBN34_RS10300 WP_000490551.1 2153009..2153605(-) (recR) [Acinetobacter baumannii strain VB2486]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424

Multiple sequence alignment