Detailed information NTG0379185

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FVP31_RS21245
• Genome accession: NZ_CP042882
• Coordinates: 4346245..4347045 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain NMBU-W07E18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4341245..4352045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVP31_RS21210 (FVP31_21380)	gspH	4341401..4341916 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
FVP31_RS21215 (FVP31_21385)	gspI	4341913..4342278 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
FVP31_RS21220 (FVP31_21390)	gspJ	4342275..4342871 (+)	597	WP_023302298.1	type II secretion system minor pseudopilin GspJ	-
FVP31_RS21225 (FVP31_21395)	gspK	4342868..4343854 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
FVP31_RS21230 (FVP31_21400)	gspL	4343841..4345034 (+)	1194	WP_099761471.1	type II secretion system protein GspL	-
FVP31_RS21235 (FVP31_21405)	-	4345027..4345512 (+)	486	WP_004145896.1	type II secretion system protein M	-
FVP31_RS21240 (FVP31_21410)	-	4345502..4346248 (+)	747	WP_004145897.1	type II secretion system protein N	-
FVP31_RS21245 (FVP31_21415)	pilD	4346245..4347045 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
FVP31_RS21250 (FVP31_21420)	hrpB	4347093..4349522 (-)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
FVP31_RS21255 (FVP31_21425)	thpR	4349595..4350131 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
FVP31_RS21260 (FVP31_21430)	sfsA	4350131..4350847 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
FVP31_RS21265 (FVP31_21435)	dksA	4351010..4351465 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=379185 FVP31_RS21245 WP_004145898.1 4346245..4347045(+) (pilD) [Klebsiella pneumoniae strain NMBU-W07E18]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=379185 FVP31_RS21245 WP_004145898.1 4346245..4347045(+) (pilD) [Klebsiella pneumoniae strain NMBU-W07E18]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425