Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPF57_RS02210 | Genome accession | NC_017367 |
| Coordinates | 446366..447376 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664515.1 | Uniprot ID | - |
| Organism | Helicobacter pylori F57 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 441366..452376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF57_RS02165 (HPF57_0432) | - | 441465..441839 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| HPF57_RS02170 (HPF57_0433) | - | 442129..442731 (+) | 603 | WP_000291631.1 | outer membrane protein | - |
| HPF57_RS02180 (HPF57_0434) | - | 442863..443270 (-) | 408 | WP_000906124.1 | hypothetical protein | - |
| HPF57_RS02185 (HPF57_0435) | - | 443273..443515 (-) | 243 | WP_000944434.1 | PP0621 family protein | - |
| HPF57_RS02190 (HPF57_0436) | rsmG | 443509..444045 (-) | 537 | WP_001068804.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPF57_RS02195 (HPF57_0437) | queA | 444042..445079 (-) | 1038 | WP_000657333.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPF57_RS02200 (HPF57_0438) | tatC | 445080..445829 (-) | 750 | WP_000461211.1 | twin-arginine translocase subunit TatC | - |
| HPF57_RS02205 (HPF57_0439) | tatB | 445822..446298 (-) | 477 | WP_000467575.1 | Sec-independent protein translocase protein TatB | - |
| HPF57_RS02210 (HPF57_0440) | ruvB | 446366..447376 (-) | 1011 | WP_000664515.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPF57_RS02215 (HPF57_0441) | panB | 447377..448189 (-) | 813 | WP_000062712.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPF57_RS02220 (HPF57_0442) | - | 448337..449059 (+) | 723 | WP_014535566.1 | hypothetical protein | - |
| HPF57_RS02225 (HPF57_0443) | - | 449049..449903 (+) | 855 | WP_014535567.1 | outer membrane beta-barrel protein | - |
| HPF57_RS02230 (HPF57_0444) | - | 449912..450850 (+) | 939 | WP_000911223.1 | outer membrane beta-barrel protein | - |
| HPF57_RS02235 (HPF57_0445) | - | 450860..452182 (+) | 1323 | WP_000423081.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37307.31 Da Isoelectric Point: 6.3684
>NTDB_id=37873 HPF57_RS02210 WP_000664515.1 446366..447376(-) (ruvB) [Helicobacter pylori F57]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAKGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAKGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=37873 HPF57_RS02210 WP_000664515.1 446366..447376(-) (ruvB) [Helicobacter pylori F57]
ATGAAAGAACGGATAGTTAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGACTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTAAAGGACGACCGGTGGGTTTGAACACGATTGCGGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTTAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGACTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTAAAGGACGACCGGTGGGTTTGAACACGATTGCGGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.321 |
100 |
0.973 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.87 |
96.131 |
0.518 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae R6 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae D39 |
50.774 |
96.131 |
0.488 |
| ruvB | Synechocystis sp. PCC 6803 |
50.629 |
94.643 |
0.479 |