Detailed information NTG0378704

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CS053_RS15940
• Genome accession: NZ_CP042807
• Coordinates: 3578527..3579933 (+)
• Length: 468 a.a.
• NCBI ID: WP_147628122.1
• Uniprot ID: -
• Organism: Rhodanobacter glycinis strain T01E-68
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3573527..3584933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CS053_RS18845	pgmB	3573606..3574577 (+)	972	WP_345775971.1	beta-phosphoglucomutase	-
CS053_RS15930 (CS053_15930)	-	3574607..3577099 (+)	2493	WP_147628120.1	TonB-dependent receptor	-
CS053_RS15935 (CS053_15935)	-	3577215..3578447 (+)	1233	WP_147628121.1	MFS transporter	-
CS053_RS15940 (CS053_15940)	pilR	3578527..3579933 (+)	1407	WP_147628122.1	sigma-54 dependent transcriptional regulator	Regulator
CS053_RS15945 (CS053_15945)	-	3579961..3581559 (-)	1599	WP_253260764.1	response regulator	-
CS053_RS15950 (CS053_15950)	-	3581618..3582064 (-)	447	WP_092704243.1	response regulator	-
CS053_RS15955 (CS053_15955)	-	3582061..3583866 (-)	1806	WP_253260765.1	ATP-binding protein	-

Sequence

Protein

• Length: 468 a.a.
• Molecular weight: 50604.98 Da
• Isoelectric Point: 5.5883

>NTDB_id=378704 CS053_RS15940 WP_147628122.1 3578527..3579933(+) (pilR) [Rhodanobacter glycinis strain T01E-68]
MSQQTVLVIDDERDIRELLTITLGRMDLQVHAVGTVAEARRALDERSYDLCFTDMRLPDGNGQEVIELIADEHPDTPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRRLVRTALKLAEEKRAGGNDAPDAAASGSRLIGDSLTMQQVRVTIGKLA
RNQAPVYIAGESGVGKELVARLIHEQGPRTSGPFVPVNCGAIPSELMESEFFGHKKGSFTGAGADKEGLFQAANGGTLFL
DEVAELPLHMQVKLLRAIQEKAVRPIGAREEVPVDVRILSATHKNLAALVEQGLFRQDLFYRINVIELRVPPLRERRGDV
PLLSAFILKQLAAKNGGDEGRLQADAKQALEAYDFPGNVRELENILERAMAMCDGDSITAADLMLPQRSPRMSGEPAPPS
PAPAGMAAAPAAAASTPDGGLDDYISNLERTAIIKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1407 bp

>NTDB_id=378704 CS053_RS15940 WP_147628122.1 3578527..3579933(+) (pilR) [Rhodanobacter glycinis strain T01E-68]
ATGAGCCAACAGACCGTCCTGGTCATCGACGACGAACGCGACATTCGCGAGCTGCTCACCATCACGCTGGGCCGCATGGA
CCTGCAGGTCCACGCCGTCGGCACGGTTGCCGAGGCCCGCCGCGCGCTGGACGAGCGCAGCTACGATTTGTGCTTCACCG
ACATGCGCCTGCCCGACGGCAACGGCCAGGAAGTGATCGAGCTGATCGCGGACGAACACCCCGATACGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTGAATGCACTCAAGGCTGGCGCGTTCGATTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCCGGCTGGTGCGCACGGCGCTGAAGCTGGCCGAGGAAAAGCGCGCCGGCGGCAACGACGCGCCCG
ATGCCGCCGCCAGCGGCAGCCGCCTGATCGGCGACTCGCTGACCATGCAGCAGGTCCGCGTCACCATCGGCAAGCTGGCG
CGCAACCAGGCACCGGTCTACATCGCCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCGCGACTGATCCACGAACAGGG
CCCGCGCACCAGCGGCCCGTTCGTGCCGGTGAACTGCGGCGCGATTCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGCC
ACAAGAAGGGCAGCTTCACCGGCGCGGGCGCCGACAAGGAAGGCCTGTTCCAGGCCGCCAACGGTGGCACGCTGTTCCTC
GACGAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAACTGCTACGCGCGATCCAGGAGAAAGCGGTGCGTCCGATCGG
CGCACGCGAGGAAGTGCCGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGAACCTGGCCGCGCTGGTCGAGCAGGGCC
TGTTCCGACAGGATCTGTTCTATCGCATCAACGTGATCGAATTGCGCGTGCCACCGCTGCGCGAGCGCCGTGGCGACGTA
CCGCTGCTGTCCGCCTTCATCCTCAAGCAGCTGGCCGCGAAGAACGGTGGCGACGAGGGTCGCCTGCAGGCCGACGCCAA
GCAGGCACTGGAAGCCTATGATTTCCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCGATGGCGATGTGCG
ACGGCGACAGCATCACCGCCGCCGACCTGATGCTGCCGCAACGCTCGCCGCGCATGTCCGGCGAACCCGCGCCGCCGTCG
CCGGCCCCGGCCGGCATGGCGGCCGCGCCTGCCGCTGCGGCATCCACGCCCGACGGTGGCCTCGACGACTACATCAGCAA
CCTTGAGCGCACCGCCATCATCAAGGCGCTGGAAGAATCCCGCTACAACAAGACCGCCGCCGCACGGAAGCTCGGCATCA
CCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-308)

• Bacterial regulatory protein, Fis family (HTH_8) (426-465)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.325	100	0.613
pilR	Acinetobacter baumannii strain A118	47.639	99.573	0.474