Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CS053_RS05075 Genome accession   NZ_CP042807
Coordinates   1234206..1234607 (+) Length   133 a.a.
NCBI ID   WP_281244059.1    Uniprot ID   -
Organism   Rhodanobacter glycinis strain T01E-68     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229206..1239607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS053_RS05050 (CS053_05050) - 1229560..1230129 (-) 570 WP_147626610.1 YqgE/AlgH family protein -
  CS053_RS05055 (CS053_05055) - 1230439..1230996 (+) 558 WP_147626612.1 TetR/AcrR family transcriptional regulator -
  CS053_RS05060 (CS053_05060) - 1231055..1232026 (+) 972 WP_216364773.1 alpha/beta hydrolase -
  CS053_RS05065 (CS053_05065) - 1232081..1232944 (-) 864 WP_147626613.1 energy transducer TonB -
  CS053_RS05070 (CS053_05070) gshB 1232941..1233903 (-) 963 WP_147626615.1 glutathione synthase -
  CS053_RS05075 (CS053_05075) pilG 1234206..1234607 (+) 402 WP_281244059.1 response regulator Regulator
  CS053_RS05080 (CS053_05080) - 1234640..1235011 (+) 372 WP_008212682.1 response regulator -
  CS053_RS05085 (CS053_05085) - 1235019..1235561 (+) 543 WP_008212684.1 chemotaxis protein CheW -
  CS053_RS05090 (CS053_05090) - 1235684..1237723 (+) 2040 WP_092705030.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14688.15 Da        Isoelectric Point: 9.1434

>NTDB_id=378693 CS053_RS05075 WP_281244059.1 1234206..1234607(+) (pilG) [Rhodanobacter glycinis strain T01E-68]
MNLNVGNNGLAGLKVMVIDDSKTIRRTAETLLKKEGCDVLTAVDGFEALAKISDQRPVIIFVDIMMPRLDGYQTCALIKN
NPQFRATPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVSTV

Nucleotide


Download         Length: 402 bp        

>NTDB_id=378693 CS053_RS05075 WP_281244059.1 1234206..1234607(+) (pilG) [Rhodanobacter glycinis strain T01E-68]
GTGAACTTGAACGTAGGCAATAACGGCCTGGCCGGTCTGAAAGTCATGGTGATCGATGACTCCAAGACCATCCGCCGCAC
GGCAGAGACCTTGCTGAAAAAGGAAGGCTGCGACGTGCTTACCGCCGTCGATGGCTTCGAGGCACTGGCGAAGATTTCCG
ACCAGCGGCCCGTCATCATCTTCGTCGACATCATGATGCCGCGACTCGATGGCTATCAGACCTGCGCGCTGATCAAGAAC
AACCCGCAGTTTCGAGCCACGCCGGTCATCATGCTGAGCTCGAAGGACGGCCTGTTCGACAAGGCCCGCGGCCGCATCGT
CGGTGCCGAGCAATATCTCACCAAGCCGTTCACTCGTGACGAGCTGCTTGGTGCCATCCACCGCCATGTCAGCACGGTTT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72

93.985

0.677
  vicR Streptococcus mutans UA159

41.88

87.97

0.368

Multiple sequence alignment