Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CS053_RS04305 Genome accession   NZ_CP042807
Coordinates   1033427..1034695 (-) Length   422 a.a.
NCBI ID   WP_147626498.1    Uniprot ID   -
Organism   Rhodanobacter glycinis strain T01E-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1028427..1039695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS053_RS04280 (CS053_04280) - 1028432..1029138 (-) 707 Protein_854 VTT domain-containing protein -
  CS053_RS04285 (CS053_04285) - 1029135..1029692 (-) 558 WP_147628529.1 nucleoside deaminase -
  CS053_RS04290 (CS053_04290) - 1029703..1031459 (-) 1757 Protein_856 glutamine--tRNA ligase/YqeY domain fusion protein -
  CS053_RS04295 (CS053_04295) coaE 1031705..1032322 (-) 618 WP_147626496.1 dephospho-CoA kinase -
  CS053_RS04300 (CS053_04300) pilD 1032319..1033179 (-) 861 WP_147626497.1 A24 family peptidase Machinery gene
  CS053_RS04305 (CS053_04305) pilC 1033427..1034695 (-) 1269 WP_147626498.1 type II secretion system F family protein Machinery gene
  CS053_RS04310 (CS053_04310) pilB 1035027..1036748 (-) 1722 WP_147626499.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CS053_RS04315 (CS053_04315) - 1037373..1038227 (+) 855 WP_147626500.1 glycosyltransferase family 2 protein -
  CS053_RS04320 (CS053_04320) - 1038291..1039580 (+) 1290 WP_147626501.1 flippase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45657.59 Da        Isoelectric Point: 10.0849

>NTDB_id=378688 CS053_RS04305 WP_147626498.1 1033427..1034695(-) (pilC) [Rhodanobacter glycinis strain T01E-68]
MATATATAKNAHAVGAQRAQVSQLTPYDWVALDKRGKRMKGTMPAKNASLVKAELRRQGMNPQTVREKSKPLFGSTGSAV
KPGDVAIFSRQIATMMASGVPMIQAFDIIADGQKNPRFKNILNDVKQGIEGGQSLHESLGRYPVQFDELYRNLVRAGESA
GVLDTVLDTVATYKERTEAIKKKIKKALFYPMMVLAVVFIVILIMLLYVVPVFAQTFQSAGASLPAPTQFLVDASHFMQS
CWYIVIGVIGGGIAAVVIGKKRSPKFAHFMDRVALKMPVMGDIVRNSAVARFSRTLGVTFRAGVPLVEAMDAVAGATGSV
VYGDAVKQMRDDIAVGHQLQLAMRQTGLFPNMVVQMTSIGEESGALDNMLFKVAEFYEEEVSNAVDTLSTLLEPIIMVVL
GTIVGGMVIALYLPIFKLAGTF

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=378688 CS053_RS04305 WP_147626498.1 1033427..1034695(-) (pilC) [Rhodanobacter glycinis strain T01E-68]
ATGGCCACGGCTACCGCTACCGCAAAAAACGCTCACGCCGTCGGCGCCCAACGCGCCCAGGTCAGCCAACTGACCCCGTA
CGACTGGGTCGCGCTGGACAAGCGCGGCAAGCGCATGAAAGGCACGATGCCGGCGAAGAACGCCTCGCTGGTGAAGGCCG
AACTGCGCCGCCAGGGCATGAATCCGCAGACCGTGCGCGAGAAGTCCAAGCCGCTGTTCGGCTCCACCGGCAGCGCGGTC
AAACCAGGCGACGTCGCCATCTTCAGCCGCCAGATCGCCACCATGATGGCTTCCGGCGTACCCATGATCCAGGCCTTCGA
CATCATCGCCGATGGCCAGAAAAACCCGCGTTTCAAGAACATCCTCAACGATGTGAAGCAGGGCATCGAAGGCGGCCAGT
CGCTGCATGAATCGCTGGGGCGTTACCCGGTGCAGTTCGACGAGTTGTACCGCAACCTGGTGCGCGCAGGCGAATCGGCC
GGTGTGCTGGATACGGTGCTCGATACCGTGGCCACCTACAAGGAGCGCACCGAGGCGATCAAGAAGAAGATCAAGAAGGC
CTTGTTCTACCCGATGATGGTGCTGGCCGTGGTGTTCATCGTCATCCTGATCATGCTGTTATATGTGGTCCCGGTGTTTG
CCCAGACATTCCAGAGCGCCGGTGCCTCGCTGCCAGCGCCGACCCAGTTTCTGGTCGATGCCTCGCATTTCATGCAGAGC
TGCTGGTACATCGTCATCGGCGTCATTGGCGGCGGCATCGCCGCGGTGGTCATCGGCAAGAAACGCTCGCCCAAATTCGC
TCACTTCATGGATCGGGTTGCACTGAAGATGCCGGTCATGGGCGACATCGTGCGCAACTCGGCGGTCGCGCGCTTCTCGC
GCACGCTCGGCGTAACCTTCAGGGCAGGCGTGCCACTGGTCGAAGCGATGGACGCCGTGGCTGGCGCCACTGGCAGCGTA
GTCTATGGCGACGCGGTGAAGCAGATGCGTGACGACATCGCGGTGGGCCATCAGTTGCAATTGGCGATGCGCCAGACCGG
ACTGTTCCCCAACATGGTGGTGCAGATGACCTCGATTGGCGAGGAGTCGGGCGCGCTGGACAACATGCTGTTCAAGGTCG
CCGAGTTCTATGAGGAAGAGGTCAGCAATGCCGTCGATACACTGTCGACCCTGCTGGAACCGATCATCATGGTGGTGTTG
GGCACCATCGTTGGCGGCATGGTGATCGCGCTGTACCTGCCCATCTTCAAGCTGGCGGGTACGTTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.551

92.891

0.488
  pilC Legionella pneumophila strain ERS1305867

51.899

93.602

0.486
  pilC Acinetobacter baylyi ADP1

48.03

96.209

0.462
  pilC Acinetobacter baumannii D1279779

48.872

94.55

0.462
  pilG Neisseria meningitidis 44/76-A

42.298

90.758

0.384
  pilG Neisseria gonorrhoeae MS11

42.298

90.758

0.384
  pilC Vibrio cholerae strain A1552

38.308

95.261

0.365
  pilC Vibrio campbellii strain DS40M4

38.095

94.55

0.36

Multiple sequence alignment