Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   FSZ17_RS16915 Genome accession   NZ_CP042593
Coordinates   3530986..3531735 (-) Length   249 a.a.
NCBI ID   WP_057771766.1    Uniprot ID   A0A5B8Z779
Organism   Cytobacillus dafuensis strain FJAT-25496     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3525986..3536735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSZ17_RS16890 (FSZ17_16885) - 3526535..3527113 (-) 579 WP_057771756.1 nucleoside triphosphate pyrophosphatase -
  FSZ17_RS16895 (FSZ17_16890) - 3527371..3528456 (-) 1086 WP_057771758.1 SPOR domain-containing protein -
  FSZ17_RS16900 (FSZ17_16895) - 3528540..3529337 (-) 798 WP_057771760.1 hypothetical protein -
  FSZ17_RS16905 (FSZ17_16900) - 3529334..3529960 (-) 627 WP_057771762.1 hypothetical protein -
  FSZ17_RS16910 (FSZ17_16905) pilM 3529963..3530955 (-) 993 WP_057771764.1 type IV pilus biogenesis protein PilM -
  FSZ17_RS16915 (FSZ17_16910) comC 3530986..3531735 (-) 750 WP_057771766.1 A24 family peptidase Machinery gene
  FSZ17_RS16920 (FSZ17_16915) - 3531777..3532208 (-) 432 WP_057771768.1 type IV pilin protein -
  FSZ17_RS16925 (FSZ17_16920) - 3532308..3533513 (-) 1206 WP_057771770.1 type II secretion system F family protein -
  FSZ17_RS16930 (FSZ17_16925) pilT 3533515..3534555 (-) 1041 WP_057771772.1 type IV pilus twitching motility protein PilT Machinery gene
  FSZ17_RS16935 (FSZ17_16930) - 3534567..3536228 (-) 1662 WP_057771774.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 27573.64 Da        Isoelectric Point: 9.6278

>NTDB_id=378596 FSZ17_RS16915 WP_057771766.1 3530986..3531735(-) (comC) [Cytobacillus dafuensis strain FJAT-25496]
MYFILIYILIIGLILGSFYNVVGLRVPQKKSIVTPRSACPSCQHKLTAFELIPVFSFVIQGGKCRQCKARISPLYPIVEL
MTGLLFAAAPLIIGWTSELFVAWTLISLFMIIFVSDVTYMIIPDKVLVFFMGIFLLERIFIPLEPWWDSLLGAAAGFLLL
LLIAIISKGGMGGGDIKLFAVLGFVLGFKLVLLSFFIATLYGSLFGVIGLITGKLKRKNPIPFGPFIAAGTLTAYFYGDL
IIQFYLVLY

Nucleotide


Download         Length: 750 bp        

>NTDB_id=378596 FSZ17_RS16915 WP_057771766.1 3530986..3531735(-) (comC) [Cytobacillus dafuensis strain FJAT-25496]
ATGTATTTTATACTAATCTATATATTGATAATTGGTCTAATACTCGGCTCCTTCTACAACGTTGTTGGCCTGCGAGTACC
ACAAAAAAAGTCAATCGTCACACCGCGCTCAGCCTGTCCAAGTTGCCAGCATAAGCTTACAGCATTCGAGCTGATTCCAG
TATTTTCATTCGTGATTCAGGGAGGGAAATGCCGCCAGTGTAAGGCGCGCATTTCTCCTCTTTATCCAATTGTTGAACTT
ATGACAGGGCTTTTGTTTGCAGCAGCTCCACTTATAATAGGTTGGACTAGTGAGCTATTTGTCGCGTGGACGCTAATCTC
ATTATTTATGATTATTTTCGTTTCTGATGTCACTTATATGATTATCCCTGATAAAGTGCTGGTTTTTTTTATGGGGATTT
TTTTGTTGGAACGAATCTTCATTCCACTTGAACCATGGTGGGATTCCCTTTTAGGAGCAGCTGCTGGATTTCTACTTCTT
CTGCTTATTGCGATCATTAGCAAAGGAGGAATGGGGGGCGGAGATATTAAGCTGTTTGCTGTTCTTGGATTTGTCCTAGG
GTTTAAACTAGTTCTGCTATCTTTTTTTATCGCAACCTTATATGGTTCTCTTTTTGGTGTTATTGGATTAATAACAGGAA
AACTAAAAAGGAAAAACCCGATTCCCTTTGGTCCTTTTATTGCTGCAGGAACTTTGACAGCTTATTTTTACGGTGATTTG
ATCATCCAATTTTATTTAGTGCTTTATTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-89)

Type IV leader peptidase family (Peptidase_A24)

(105-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8Z779

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

51.883

95.984

0.498

Multiple sequence alignment