Detailed information NTG0037809

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HSERO_RS01760
• Genome accession: NC_014323
• Coordinates: 390743..391606 (-)
• Length: 287 a.a.
• NCBI ID: WP_013232402.1
• Uniprot ID: -
• Organism: Herbaspirillum seropedicae SmR1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 385743..396606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSERO_RS01730 (Hsero_0349)	argJ	386389..387624 (+)	1236	WP_013232396.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
HSERO_RS01735 (Hsero_0350)	-	387633..388508 (+)	876	WP_013232397.1	ATP-binding protein	-
HSERO_RS01740 (Hsero_0351)	-	388508..388951 (+)	444	WP_013232398.1	NUDIX domain-containing protein	-
HSERO_RS01745 (Hsero_0352)	yacG	388988..389173 (-)	186	WP_013232399.1	DNA gyrase inhibitor YacG	-
HSERO_RS01750 (Hsero_0353)	zapD	389203..389958 (-)	756	WP_013232400.1	cell division protein ZapD	-
HSERO_RS01755 (Hsero_0354)	coaE	390111..390731 (-)	621	WP_013232401.1	dephospho-CoA kinase	-
HSERO_RS01760 (Hsero_0355)	pilD	390743..391606 (-)	864	WP_013232402.1	prepilin peptidase	Machinery gene
HSERO_RS01765 (Hsero_0356)	-	391658..392905 (-)	1248	WP_013232403.1	type II secretion system F family protein	-
HSERO_RS01770 (Hsero_0357)	pilF	392892..394025 (-)	1134	WP_013232404.1	GspE/PulE family protein	Machinery gene
HSERO_RS01775 (Hsero_0358)	-	394189..395493 (-)	1305	WP_013232405.1	HlyC/CorC family transporter	-
HSERO_RS01780 (Hsero_0360)	infA	395922..396185 (+)	264	WP_013232407.1	translation initiation factor IF-1	-
HSERO_RS01785 (Hsero_0361)	-	396295..396546 (+)	252	WP_041310014.1	hypothetical protein	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31140.28 Da
• Isoelectric Point: 7.9264

>NTDB_id=37809 HSERO_RS01760 WP_013232402.1 390743..391606(-) (pilD) [Herbaspirillum seropedicae SmR1]
MPFLEAYALPGDPILCALAALLGLLVGSFLNVLIHRLPIMMLRESANFVAQERGETPPHQDRYDLWLPSSACPHCATPLP
WRHKLPVLSWLLLRGRCGHCQAAIGLRYPLVELLTAALFAFAAWRFGLGVTGLAVMACTATLVALAFIDAQTMLLPDDLT
LPLMWLGLLVNLTHRLVPLQDAVLGAAAGYGVLWLIFWLFKLITGKDGLGYGDFKLMAALGAWLGWQALPVILLLASAMG
AVLGVVLMAAGRHRRGQAIPFGPCLASAGLLALLQGLDWLWRGLYDY

Nucleotide

• Length: 864 bp

>NTDB_id=37809 HSERO_RS01760 WP_013232402.1 390743..391606(-) (pilD) [Herbaspirillum seropedicae SmR1]
ATGCCCTTCCTGGAAGCCTACGCCCTCCCCGGCGACCCCATCCTCTGCGCGCTGGCGGCCCTGCTGGGCTTGCTGGTGGG
CAGTTTCCTCAATGTGCTGATCCACCGCCTGCCCATCATGATGCTGCGCGAAAGCGCCAACTTCGTGGCGCAGGAGCGCG
GGGAAACGCCGCCCCATCAAGACCGCTACGACCTCTGGCTGCCCTCATCGGCCTGTCCGCACTGCGCCACCCCTCTGCCC
TGGCGTCACAAGCTGCCGGTACTGAGCTGGCTGCTGCTGCGCGGGCGCTGCGGCCACTGCCAGGCCGCCATTGGCCTGCG
TTATCCATTGGTAGAGCTGTTGACGGCGGCGCTGTTCGCCTTCGCCGCCTGGCGCTTCGGCCTGGGCGTCACCGGCCTGG
CCGTGATGGCCTGCACGGCCACGCTGGTCGCGCTGGCCTTCATCGACGCCCAGACCATGCTGCTGCCCGACGACCTGACC
CTGCCGCTGATGTGGCTGGGCCTGCTGGTGAACCTGACGCACCGCCTGGTGCCCCTGCAGGATGCGGTGTTGGGCGCTGC
GGCCGGGTATGGCGTGCTATGGCTGATCTTCTGGCTCTTCAAGCTCATCACCGGCAAGGATGGGCTGGGCTATGGCGACT
TCAAGCTCATGGCTGCGCTCGGCGCCTGGCTGGGCTGGCAGGCGCTGCCGGTGATCCTGCTGCTGGCCTCGGCCATGGGC
GCGGTGCTAGGGGTGGTGCTGATGGCGGCTGGCCGGCATCGCCGCGGCCAGGCCATTCCCTTCGGACCTTGCCTGGCCAG
CGCCGGCCTCTTGGCGCTGTTGCAGGGACTGGACTGGCTCTGGCGGGGACTTTACGACTACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.309	94.774	0.505
pilD	Vibrio campbellii strain DS40M4	48.029	97.213	0.467
pilD	Neisseria gonorrhoeae MS11	48.188	96.167	0.463
pilD	Acinetobacter baumannii D1279779	43.223	95.122	0.411
pilD	Acinetobacter nosocomialis M2	43.223	95.122	0.411