Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HSERO_RS00405 Genome accession   NC_014323
Coordinates   95981..97504 (-) Length   507 a.a.
NCBI ID   WP_013232165.1    Uniprot ID   D8ITX0
Organism   Herbaspirillum seropedicae SmR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 90981..102504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSERO_RS25145 - 91531..92040 (-) 510 WP_041309936.1 hypothetical protein -
  HSERO_RS00390 (Hsero_0078) - 92009..93448 (-) 1440 WP_013232162.1 phosphatase PAP2/dual specificity phosphatase family protein -
  HSERO_RS00395 (Hsero_0079) - 93445..95196 (-) 1752 WP_013232163.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  HSERO_RS00400 (Hsero_0080) - 95193..95807 (-) 615 WP_013232164.1 CDP-alcohol phosphatidyltransferase family protein -
  HSERO_RS00405 (Hsero_0081) comM 95981..97504 (-) 1524 WP_013232165.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HSERO_RS00410 (Hsero_0082) - 97578..97823 (-) 246 WP_006713294.1 accessory factor UbiK family protein -
  HSERO_RS00415 (Hsero_0083) - 98251..99039 (+) 789 WP_013232166.1 TorF family putative porin -
  HSERO_RS00420 (Hsero_0084) - 99052..99390 (+) 339 WP_006713297.1 P-II family nitrogen regulator -
  HSERO_RS00425 (Hsero_0085) - 99406..100938 (+) 1533 WP_013232167.1 ammonium transporter -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54741.79 Da        Isoelectric Point: 9.0119

>NTDB_id=37808 HSERO_RS00405 WP_013232165.1 95981..97504(-) (comM) [Herbaspirillum seropedicae SmR1]
MSLAVLRSRALAGMNAPPVTVEVHLANGLPSFAIVGLPEAEVKEARDRVRAALQNARFEFPARRITVNLAPADLPKESGR
FDLAIALGILAASQQIPGDRLDDYEYAGELSLSGQLLPIRGALAMTCAMQHGASADERRRAFILPAANADEAALVTQAEI
VPARSLLEVCAHFTSRDESTRLARHRPQQDALAPVYPDFSEIKGQLLARRAMEVAAAGRHSMLLVGPPGAGKSMLATRFP
GILPPMTEAEALESAAVRSLTGGFDPARWRQRPFRAPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDEIAEYRRSVLE
VLRQPMESGQITISRAARQADFPARFQLLAAMNPCPCGYHGQASGQCRCSPEMVRRYQQRLSGPLLDRIDMQLQVAALSP
GELAVQASGESTARIAARVAVAFERQISRQGKPNSALAGAEIDRHCQPGPDAAQLLQTAMLRLGWSARAYHRVLKLARTM
ADLAAAEQIDRQHVAEAIQYRRGLSME

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=37808 HSERO_RS00405 WP_013232165.1 95981..97504(-) (comM) [Herbaspirillum seropedicae SmR1]
ATGAGCCTGGCGGTCCTGCGCAGCCGCGCCCTGGCCGGCATGAACGCCCCACCGGTCACGGTGGAGGTGCATCTGGCCAA
TGGCCTGCCCTCCTTCGCCATCGTCGGCCTGCCCGAGGCCGAGGTGAAGGAAGCCCGTGACCGCGTCCGGGCGGCATTGC
AGAACGCCCGCTTTGAATTCCCGGCGCGGCGCATCACCGTCAACCTCGCGCCTGCCGACCTCCCCAAGGAATCCGGCCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTGGCCGCCTCCCAGCAGATCCCCGGCGACCGGCTGGACGACTACGAATACGC
CGGCGAGCTATCCCTCTCCGGCCAGTTGTTGCCCATCCGCGGCGCCCTGGCGATGACCTGCGCCATGCAGCACGGCGCCA
GCGCCGACGAACGGCGGCGCGCCTTCATCCTGCCCGCCGCCAATGCCGACGAGGCCGCGCTGGTGACGCAAGCCGAGATC
GTCCCGGCCCGTTCGCTGCTGGAGGTCTGCGCCCACTTCACCAGCCGCGACGAGAGCACCCGGTTGGCGCGCCACCGGCC
GCAACAGGACGCCCTCGCACCGGTGTATCCCGATTTCAGCGAGATCAAGGGGCAATTGCTGGCGCGCCGCGCCATGGAAG
TGGCGGCGGCGGGACGGCACAGCATGCTGCTGGTGGGGCCGCCCGGAGCGGGCAAGTCAATGCTGGCCACGCGCTTTCCG
GGCATCCTGCCGCCGATGACCGAGGCGGAAGCGCTGGAATCGGCGGCGGTGCGCTCCCTCACCGGCGGCTTCGACCCCGC
GCGCTGGCGACAACGCCCCTTCCGCGCGCCCCACCACACCGCCTCGGCGGTCGCACTGGTGGGCGGTGGCAGCCCGCCCC
GGCCCGGCGAGATCTCGCTGGCCCATCATGGGGTGCTGTTCCTCGATGAAATCGCCGAATACCGGCGCAGCGTGCTGGAG
GTGCTGCGCCAGCCCATGGAATCCGGACAGATCACCATCTCGCGGGCGGCCCGCCAGGCGGATTTCCCGGCGCGCTTCCA
GCTGCTGGCGGCGATGAATCCCTGCCCCTGCGGCTACCATGGCCAAGCCAGCGGGCAGTGCCGTTGTTCACCCGAGATGG
TGCGGCGCTATCAGCAGCGCCTGTCAGGGCCCCTGCTGGACCGCATCGACATGCAATTGCAGGTCGCCGCCCTGAGCCCC
GGCGAACTGGCCGTCCAGGCCAGCGGCGAATCCACCGCCCGCATCGCCGCCCGCGTGGCCGTGGCCTTCGAGCGCCAGAT
CAGCCGCCAGGGCAAACCCAACAGCGCCCTTGCCGGCGCGGAAATCGACCGTCATTGCCAGCCCGGCCCCGATGCTGCGC
AACTGCTGCAGACCGCCATGCTCAGGCTGGGCTGGTCGGCGCGCGCCTATCACCGCGTGCTCAAGCTGGCGCGCACCATG
GCCGACCTGGCCGCCGCCGAACAGATCGACCGGCAGCACGTGGCCGAAGCCATCCAGTACCGCCGCGGTCTATCCATGGA
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(21-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D8ITX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.286

99.211

0.519
  comM Vibrio campbellii strain DS40M4

51.292

99.211

0.509
  comM Glaesserella parasuis strain SC1401

49.706

100

0.501
  comM Legionella pneumophila str. Paris

49.608

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.608

100

0.499
  comM Haemophilus influenzae Rd KW20

50

99.803

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.452

Multiple sequence alignment