Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   HBL79_RS00200 Genome accession   NZ_CP050316
Coordinates   41560..42102 (+) Length   180 a.a.
NCBI ID   WP_017805302.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ESV-135     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 36560..47102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBL79_RS00175 (HBL79_00175) - 37035..37964 (+) 930 WP_035688007.1 phosphatidate cytidylyltransferase -
  HBL79_RS00180 (HBL79_00180) mog 37982..38560 (+) 579 WP_035688005.1 molybdopterin adenylyltransferase -
  HBL79_RS00185 (HBL79_00185) glnB 38589..38927 (+) 339 WP_017805299.1 nitrogen regulatory protein P-II -
  HBL79_RS00190 (HBL79_00190) - 38930..39982 (+) 1053 WP_035688003.1 AI-2E family transporter -
  HBL79_RS00195 (HBL79_00195) - 40357..41526 (+) 1170 WP_035688001.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  HBL79_RS00200 (HBL79_00200) pilF/pilF2 41560..42102 (+) 543 WP_017805302.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  HBL79_RS00205 (HBL79_00205) dprA 42247..43347 (+) 1101 WP_035687998.1 DNA-processing protein DprA Machinery gene
  HBL79_RS00210 (HBL79_00210) rsmD 43344..43952 (-) 609 WP_046097259.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HBL79_RS00215 (HBL79_00215) pilA 44108..45526 (+) 1419 WP_035687996.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20715.73 Da        Isoelectric Point: 8.0752

>NTDB_id=378057 HBL79_RS00200 WP_017805302.1 41560..42102(+) (pilF/pilF2) [Avibacterium paragallinarum strain ESV-135]
MKIYQCILSILFSLFLVACVSTPLNKQDFDKQQAAKARVELGIGYLEQNELGLAKQNLDKALAYAPNYYLVHSALAYFYQ
LQGENTRAENAYLKALKLDDKQGDVFNNYAVFLCKQGQFEQAYLRFEQALATPNYYQQADTYENIVLCALAEKNAIRYEK
YKGLLEKLDPKRNQKTNVIH

Nucleotide


Download         Length: 543 bp        

>NTDB_id=378057 HBL79_RS00200 WP_017805302.1 41560..42102(+) (pilF/pilF2) [Avibacterium paragallinarum strain ESV-135]
ATGAAAATTTATCAATGTATCTTAAGCATTCTTTTTTCTCTCTTTCTCGTAGCCTGTGTTTCCACTCCCTTAAATAAGCA
AGACTTTGATAAGCAGCAAGCCGCAAAGGCGAGAGTGGAGCTTGGCATTGGCTATCTTGAGCAAAATGAACTTGGTCTGG
CGAAGCAAAATTTAGACAAAGCTTTAGCTTATGCCCCGAATTATTATTTAGTGCATTCAGCGTTGGCATATTTTTATCAG
CTTCAAGGGGAGAATACTCGTGCGGAAAATGCGTATTTGAAAGCCCTAAAACTCGACGATAAACAAGGCGATGTATTTAA
TAATTATGCCGTCTTTTTGTGCAAACAAGGACAATTCGAACAGGCTTATCTACGATTTGAACAAGCTCTCGCCACACCTA
ATTATTATCAGCAAGCGGATACTTACGAGAATATTGTACTTTGTGCGTTAGCAGAGAAAAATGCAATACGTTATGAAAAA
TATAAAGGCTTGCTGGAGAAACTAGATCCTAAAAGAAATCAAAAGACAAATGTTATTCATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

50.292

95

0.478
  pilF Glaesserella parasuis strain SC1401

43.407

100

0.439

Multiple sequence alignment